Pseudomonas putida GB-1, PputGB1_4219 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida GB-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGTCGGCGCGCAGGATGAACATCACGTACTTGAACGAAACCACCCACAGCAGCGACCACAGGATCAGCGACAGGATCCCCAGCACACCATCATGGTTGAC CGGCACCCCATAACCGCCGGTAAAAACTTCCTTGAGGGTATACAACGGGCTGGTGCCGATATCGCCATAAACCACCCCGACCGCCGCCACGAGCAGGCCC AGCGACCGCGCTGCCCCCTGCTTGCCCTCGTGCCCGCCCTCAGCGTGACTGCTTGCCTGAACCATCGACCACTCCCGCACACGGCCATCACGGCCCTTGG TAATCACTCTGCTACCAGGCCCATGAAGGTACGCTGGCGCAACGGCGCGAAGCATAGCGCAGCGTTCGTCGTATTTCTGCTGGTCAAGCGCTCTTGCGCT CGCTAGAATTGCGCACTTTTTGATCAGAGGCGCCCAAAGCGCCCGTCAAGATCGCCCGCGATTCCGGCCGGGCGACCTGCATTCAATACCGAGGTTAGTC
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| DNA Sequence for Gene |
>PputGB1_4219
|rimO
ATGTCCACCACGCCCGCCACCCCCAAGGTAGGTTTCGTAAGCCTGGGTTGCCCAAAAGCCCTGGTCGATTCCGAGCGCATCCTGACCCAGCTGCGCATGG AAGGCTATGAAGTCGTGCCCACCTACGAGGACGCCGACGTTGTGGTGGTCAACACCTGCGGCTTCATCGACAGCGCCAAGGCCGAGTCGCTGGAAGTGAT CGGCGAAGCGATCAAGGAAAACGGCAAGGTCATCGTCACCGGCTGCATGGGCGTAGAAGAAGGCAGCATCCGCGACGTGCACCCGAGCGTGCTGTCGGTC ACCGGCCCGCAGCAGTACGAGCAGGTAGTCAACGCCGTGCACGAAGTGGTGCCGCCGCGTCAGGACCACAACCCACTGATCGACCTTGTGCCGCCACAGG GTGTCAAGCTGACCCCGCGCCACTATGCGTACCTGAAAATTTCCGAAGGCTGCAACCACAGCTGCAGTTTCTGCATCATCCCGTCGATGCGCGGCAAGCT GGTCAGCCGCCCGGTGGGCGAAGTGCTGAGCGAGGCCGAGCGCCTGGTGAAGGCTGGCGTGAAGGAGATCCTGGTGATTTCCCAGGACACCAGCGCCTAC GGCGTCGACGTCAAGTACAAGACCGACTTCTGGAATGGCCGCCCGGTCAAGACCCGCATGCTTGAGCTGTGCGAAGCGCTGAGCAGCCTGGGCGCCTGGG TCCGTCTGCACTACGTGTACCCATACCCGAACGTGGACGACGTGATCCCGCTGATGGCCGCCGGCAAGATCCTGCCGTACCTGGACATCCCGTTCCAGCA CGCCAGCCCGAAAGTGCTCAAGTCGATGAAGCGCCCGGCCTTCGAAGACCGCACCCTGGCGCGCATCAAGAACTGGCGCGAACAGTGCCCTGAGTTGGTG ATCCGCTCTACCTTCATCGTCGGCTTCCCGGGCGAGACCGAGGAAGACTTCCAGTACCTGCTGGACTGGCTGACCGAGGCCCAGCTCGACCGCGTTGGCT GCTTCCAGTACTCGCCGGTGGAAGGCGCCCCGGCCAACGACCTGGGCCTGGAAGAAGTGCCGGACGACATCAAACAAGAGCGCTGGGACCGCTTCATGGC CCACCAACAAGCCATCAGCACCGCCCGCCTGCAACTGCGCATCGGTAAGGAAATCGAGGTGCTGATCGACGAAGTCGAGGAGCAGGGTTCGGTTGGCCGC AGCTTCTTCGATGCCCCGGAAATCGACGGCAACGTGTTCATCGACGGTGACCATGGTTTCAAGCCAGGCGACAAAGTGCGTTGCCGTGTCGTGGATGCCG ACGAATACGACATGTGGGCAGAGCCTATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACGGCTGAAACATGAAAAGCCCCTGCCCCGGCACTCCCCACCAGGAACTACCGGCGCAGGGGCTTTTTTGTCAGAACGTGTGAAATAGCATCAGGCCGC CCTCGGCATCCGGGCTGGCATCCGAGAAGCCTTTGACCGCGTAGAGTTGTACTTTCCACTGCTGGTTGAGCTTGTGGGTGAGGAACAGCGTCAGTTCCTG GATCTGCGATCCGGTCGAGACCACTTTTTGCCGCCAATCATAGGAAGCACCTGCCGAAGTGCCCGCAGCCACGGGTAGCGCAAAGCCGAGGCTGGCAAAT ACCGGGTCGTCGAAGTTGCTGTCGGGTGGGTCACCGAACTTCTTCCAGCCCAGCGTGGCGAACCCGGTGACCAGGCCAAAGCCCTTGGTGATGTCGACCT GGGCGGTGTAGTCGTACTCACCGGTGCCCAGGCACTGGTCTTCATCGGCGGTGGGGAATTTGACCTTGCCGATCAGGTCCAGCATCAGGCCACCGTCACT
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| Amino Acid Sequence |
>30S ribosomal protein S12 methylthiotransferase
MSTTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGSIRDVHPSVLSV TGPQQYEQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAY GVDVKYKTDFWNGRPVKTRMLELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDRTLARIKNWREQCPELV IRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLGLEEVPDDIKQERWDRFMAHQQAISTARLQLRIGKEIEVLIDEVEEQGSVGR SFFDAPEIDGNVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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