Pseudomonas putida GB-1, PputGB1_3356
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida GB-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGGCCGACCGGTTGCGCGCGCTGGACTATGAAGTGACCCACACGGTGATCCGCTCGCCCATCGACGGCATGGTCCAGGGCCTGAGCATCGCCACGGTC GGCGGCATTATCCAGCCAGGTGCCAAGATCATGGAAGTGGTGCCGCTCGACCAGCCGCTGCAGGTCGATGCGATGATCCCGGTACAGGCCATCGACAAGA TGGTGCCAGGCCTGGCCGTAGACATCGCCTTCCCGGCTTTCAACCATGCTCAGACGCCGAACATTCCAGGGCGGGTGAAGACCATTTCCGCCGACCGCCT GCTCGACGAAGAAAGCAAGCAGCCGTTCTACCTGGCCCAGGTGGAAGTGACGCCAACCGGCATGGGGCTGCTGGGCAGCAACCATATTCGCCCCGGCATG CCCGCCACCGTCACCATCAAGACCGGCGAACGCAACCTGCTCAGTTACCTGCTCAAACCCATGCTCGAACGCGTAGACGCCGCGTTCAAGGAGCAATGAC
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| DNA Sequence for Gene |
>PputGB1_3356
ATGAAACGCCCATGCCTGCTGTTGTGCCTGTTGGGGGTGGCCGTTCAGGCCAGTGCCATGGACCTGAAGGAAGCCTGGGACCTGTTGCAATACCAGGGCC CGATCTACCGCGCCGCGGTGCATGAGAAACAAGCCGGCGGCGAGAACCGCGCCATCGGTGAGGCGGGCCTGCTGCCGCAGATCAACGCAGCGGCCTACTT CAACAGGGTCAATGGCAGCCAGCGCCAGAATGGCCAGGACAACGACCTGGACTACGACTCCAAAGGCGCCAACGTGCGCCTGCGCCAGCCGCTGTTCAAC AAGCAGAAGATGGCCGAGTACCGCCAGGGTCAGCAACGGGCCGACTATAGCGTGGCGGTGTTCGATGCCAAGAGCCAGGACGCCGCCGTGCGCCTGGCCG ACGCCTACTTCGATGTGCTGCTGGCCAGCGAAACCATCACCCTGGCCAAGGCCAAGTTGAACGCCTTCGAAGAGCAACTGGCCTCGGCAAAGCGGCGCAA GGAGCTGGGGGCCGGCACCATCACCGATGTCGACGAATCGGTGGCCCGCCGTGACCTCGCCGAAGCCGACCTGATCGAGGCCCAGGACAACCTGATCAAC GCCCGGCGCAAGCTGGAGGAATACATTGGCGAAACCCCGCAGTCGCTGACCACTTTGCAGCCAGGCTTCGCCACCCCGCCGCTGATGCCGGGCAACCTGC AGGACTGGCTGGTGAAAGCCCAGGCCGACAGCCCGCTGATTCATGCGCGCCGGCACAACTACGAGCTGGCCGAAGAAGAAGTCAACCGCGCCCGCGCCGG GCACTACCCTACCCTGGATTTCGTGGCAGGCTATACCGCTGGCAGCAGCCAGTCGATATCCGAGTTGAACCAGCGCAACCACTACAGCTCGATCGGGCTG GAGCTGAACATTCCGCTGTACAGCGGCGGCAGTACGAGCGCCCTGACCCGTCAGGCCAGCGCCAACAGTTCCAAAGCCCTGGACGAACTCGACGCAACGC GCCAGGAGGTGATTTCCGACACCACCCGCGAGTACCGTGGCGTGCAGAGTGGCGCCTTGCGCGTTCATGCGCTGGAAAAGGCCGTGGCCTCCAACGAACG CTCGCTGACTTCGACCCGCAAGGGCTTCAAGGAAGGCGGCACCAGCACCAATTCGGACGTGCTCAACGCCGAGGAACTGCTGTATGACGCCCGCCATGAT CTGTTCGAGGCCAAGTTGAACTACCTGATGTCACGGTTGCGCCTGGCCTCCTCGGTGGGCAGCCTCGGGGATGACGATATCGAACAGGTCAACAGCTACC TGGGGCCGGAACTCATGGTGAGCAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCTGACTTCCCATAGCTGCGACGCATTTCTTCGCGCTATGATCGGTCACCCTTGCCGCGGACGTCCTGAACCATGCCCGTAGACCTGCAAGCCTTGTAC CCCAGGCTGATCCACCTGATGCTGGATACGGTGTTCGTGGTCGACAGGGACAACCAGATCGTCTTCGTCAGCGATGCCTGCGAAGTGTTGCTGGGCTACA AAGCCTGCGAACTGGTTGGCACACCGATCACCGACTACATGCACCCTGACGACCTTGCAGCCACGCGCGCCTCTATTGTGCGGGTGATGAACGGCCAGGC GCACTACGACTTCCGCAACCGCTATGTACGCAAGGACGGCGGCGTCGTGCACATCCTGTGGGCAGCCAGCTGGTCCGAAGAGGCTCAAGCGCGTATCGGT GTGGCGCGGGATGTGACCGCCTTGCGCCAGGCCGAAGATGAACTGCGCTTCCTCGCCCATCACGACCCGCTGACCCGGCTGGCCAACCGGGCCATGTTCA
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| Amino Acid Sequence |
>TolC family type I secretion outer membrane protein
MKRPCLLLCLLGVAVQASAMDLKEAWDLLQYQGPIYRAAVHEKQAGGENRAIGEAGLLPQINAAAYFNRVNGSQRQNGQDNDLDYDSKGANVRLRQPLFN KQKMAEYRQGQQRADYSVAVFDAKSQDAAVRLADAYFDVLLASETITLAKAKLNAFEEQLASAKRRKELGAGTITDVDESVARRDLAEADLIEAQDNLIN ARRKLEEYIGETPQSLTTLQPGFATPPLMPGNLQDWLVKAQADSPLIHARRHNYELAEEEVNRARAGHYPTLDFVAGYTAGSSQSISELNQRNHYSSIGL ELNIPLYSGGSTSALTRQASANSSKALDELDATRQEVISDTTREYRGVQSGALRVHALEKAVASNERSLTSTRKGFKEGGTSTNSDVLNAEELLYDARHD LFEAKLNYLMSRLRLASSVGSLGDDDIEQVNSYLGPELMVSN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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