Pseudomonas putida GB-1, PputGB1_3233
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida GB-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AAAATCTTCACCGTGATTTCCCGTCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTACGCCCTGTGCCTTGGGCTCAGGGGCA AGTACGCCCTCGCGCCCAAGGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATTCGCGAACTACGCGGCCCCACGCCAGAAGAAGT CTGCGACCCCTACACCAACGTGGCCCCACGAAATTTCCGCATGGACCGGCAGTGGCCCTGGTGGAGCCCCCTGGTGATTTCGGCCATCGCAATGGCTGTG GCCTACGGCATCTACAGCTATCGCCTGCACCTGATTACCACCGAGGTAGTGGAGTCGCTCAACGGCATCTTGCAGCAGTAGGTCGCACGCGTAATTAACG ATTTAGCGAGGCTTCTGCCTTGTTGACAAGCCCATCGCTTCTGATGGCCACGCCACCTGTGGTGCGCGTGTCAATTCACATGGACGCAGGAGAAACTGCC
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| DNA Sequence for Gene |
>PputGB1_3233
ATGCCAACCCCCGCTTACATCAAGATCGAAGGCAAGACCCAAGGCAACATCACCGCAGGCGCATTCACCTCCGACTCAGTCGGCAATGTATTCGTCGAAG GCCACGAAGACGAGATTCTGGTGCAGGAGATCAAGCACCAGGTGACCGTTCCCACCGATCCGCAAAGTGGCCAGCCTGCTGGCCAAAGGGTGCACAAGCC CTTCATTTTCACCAGCTCACTAAACAAAGCCACACCATTGATGTACCAGGCGCTGGCCAGCGGCGAAATGCTGCCAGTCGTTGAAGTGAACTGGTACCGC ACCTCGGTGGAGGGGAAGCAAGAGCATTTCTTCACCACCAAGCTGGAGGACGCCACCATCGTGGACATCAATACCACCTTGCCGCATGCCCAAGACCAGA CAAACGCTAACTATACGCAGTTGATCGAAGTGGCAATGTCATACCGCAAGATTTCCTGGGCCCACGTGACGGCGGGTACGGAAGGCTCCGACGACTGGCG CAAACCGATCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCTAACGAAAAGCCTGGGCAGCCATGATCTGCCTGGGCACTTCGAAGTCTTAAACGGCGAACAAGGACTGCATATGCCCAGCCGATCTAGTTTGCGATAC AGCTTCCAGCCCCAGGTGGGAAACGCTGAATTCGAAGTGGTGTCGTTCAAGCTCAAGGAGGAGCTCAGCCAACCGTTCACATTAACCCTGGAGCTGATCA GCTTTGAGCACGATGTCGACTTTGGCCACTTGCTCGACAAACCAGCGCTGTTCACCATCTGGGACGGTGCCCACCCCGTACGTTACGTACACGGCCTAAT CAGCAGCTTCAGCCAGGGCGAGAGTGGTTTCTCCCGCACTTACTACCATGCCTTGGTCGAACCCCAATTGGCCCGTGCCAGGCTTCGCTCGAACTGGCGC ATCTTCCAGCACAAGACCGTTCCGCAAATTCTCGAGCTCATGCTCAAGCGCCAAGGCATCGTCCAGTTCGACATGCGCACTAGCATGGACCATCAGGTAC
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| Amino Acid Sequence |
>Hcp1 family type VI secretion system effector
MPTPAYIKIEGKTQGNITAGAFTSDSVGNVFVEGHEDEILVQEIKHQVTVPTDPQSGQPAGQRVHKPFIFTSSLNKATPLMYQALASGEMLPVVEVNWYR TSVEGKQEHFFTTKLEDATIVDINTTLPHAQDQTNANYTQLIEVAMSYRKISWAHVTAGTEGSDDWRKPIA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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