Pseudomonas putida GB-1, PputGB1_3228
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida GB-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGCACTAATCGGGACCTACCGCTGGCGCTGGGCATCGATGACATCAACGTCCTGACCGAACTCACGCCCCCGCTGGCCACCTACACCAACCTCTGTAAAC CCACCCGTCCCTGCCGCCCGGTGCTGGACGGCCAGTTGCAATGGGCATTGATTTCAAACATGTCGCTCAACTACCTCTCCCTGCTCTCGGTAGAGCCGCT TAAAGCAGTGATACGAGCCTATGACTTCATGGCCCTACACGACATCCAGCAGGCCCGCACCACCCGTAAACGCCTGGAAGGTATGCGCGATATTCATACA CAACCCATGGATTGGCTAATAAAGGGACAACCTATTCGTGGTCTGCACACCCGGCTGAAACTGGACCAGACCGCCTTCCTTTGCGAAGGCGACTTGTACT TGTTCAGTTGTGTGCTCGCCCACTTCTTCGCCCTGTACGCCAGCATCAACTCCTTCCACCAGTTGGAAGTGATCAACACCACCAATAATGAGCACTACAC
|
|
| DNA Sequence for Gene |
>PputGB1_3228
ATGGCCAATACAGACCGGCAAGCAACCGCTGATCTAGCCGACAAGCTGCTCTCGGAAGCGCACCAGTACAACTTCTTTCAGTTGCTGGAACGGCTGCATG GCTTGCATGGCGATGATCTGGAACCCCGTTGGCCGGATGAAGCAACCCGGCTGCGTGTGCGCCTGGCCTGCGACCCCCGGCTGACCTTCCCCGTTTCGGA CGTGTACAACGCCCAGCGGATGCACACTGAGGAGGAGCGCTACCGAGTCGTTGCCACGTTCATGGGTTTGCACGGTACTGATTCACCGCTGCCCACCTAT TACCTGGAACAAGTGGCCTATGAACATGCACAGGGCATTGGTGTGCGACCGGCCTTCTTCGACTTTTTCAACCACTACCTGCTCAGCCTGTTACACCGGA TCTGGCGCAAGTACCGCTACTACATCCGTTTCCAGCCAGGTGCCAGTGACGGGTTTTCGCAATACGTGTTTGCCCTGCTGGGGCTTAATGACAAACAGCT GCGAGGGGACACGGCACTCCCGTGGAGCCGGCTGCTCAGCTTTGCTGGCGTTATCGCCAGCCGCAGCCGTGCGCCGGGCACCGTGGCCGGCATCATAGGA CACTGCTTCGACCTCAAACACGTACAGATTCGCGAGTTCGAAACGCGTTCGGTACCCACAGCGGCCAGACAGCTTGTAAGCCTGGGCCGCTCTAACGGCC AGCTGGGCAGCACGTTCATGGTCGGCAGCCGCACCCGCACCCGCAGCAGCAAGTTCACCATCGTGATCAGCGAACTCGACCAAGCGCAGATGCGGGACTT GCTGCCCAGCGGCATCAACTTCGGCCGTTTGCGTGCACTGATCGGCTTTCTGCTGCGTGACGGGCTGGCCTACGACCTGGAACTGCGCCTGAAGCAGAAC GCATTGTCGCCTTTCTGCCTGCACCGCAGCCAGGGCGCCTACCTGGGCTGGACCAGCTTCTTCGATGACCAGCATGGCCAGCTCAGCCCTGTCGTGCAGT TCAGGGGGCGTTCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCACTTTGACCTTGAGCATCATCAACCTCGGCCAACTGCGGCATGACATGACAGCGCGGCATCGGTTCGATTGCAAAGGCGGGACCATCGGAAGCAGGCG GGCTAACTGGCGGCTCAATGACCGTGATCAGGCCGTGGCGCCTATCCACTGCGAAATCCGCTGGATTGAAGGCAGCTTCTGCGTGATCGATCACTGCCAC CGCACCTATATGAATGACAGCTCCGTCTGCCTGGGATCACTCCCTCCCAGGCGCCTGATGGAAGGGGACCAACTTCGCATTGGTGCTTATCGACTACAGG TGCAGTACGCCCAGGATCCAGCATGCACGCATGCCCTGGAGGACCTGTTCAACCCAGATCGCAGGGTACTCGACCGCTTGGTAGCCGAAGCCCCTATCAG CCCATGGCAGGCCAAACCTACTCCCAGCCAACCTGTCGCCGAGATCTGCTCGGTCTTTGGGACTGACATGGGAAATGATCCCCTGGCGGCGCTGGAGGCA
|
|
| Amino Acid Sequence |
>type VI secretion protein
MANTDRQATADLADKLLSEAHQYNFFQLLERLHGLHGDDLEPRWPDEATRLRVRLACDPRLTFPVSDVYNAQRMHTEEERYRVVATFMGLHGTDSPLPTY YLEQVAYEHAQGIGVRPAFFDFFNHYLLSLLHRIWRKYRYYIRFQPGASDGFSQYVFALLGLNDKQLRGDTALPWSRLLSFAGVIASRSRAPGTVAGIIG HCFDLKHVQIREFETRSVPTAARQLVSLGRSNGQLGSTFMVGSRTRTRSSKFTIVISELDQAQMRDLLPSGINFGRLRALIGFLLRDGLAYDLELRLKQN ALSPFCLHRSQGAYLGWTSFFDDQHGQLSPVVQFRGRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|