Pseudomonas chlororaphis YL-1, P637_RS0110610
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis YL-1 contig43, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCACCGCGACATTCTCCAGGGCCTGGATGCCGAGCCCGGCATGCTCATCGCCCCACGCACGGTGATGCACATCCTGCTGTTGCAGCTGCTGTATTCGG TGCCCGGCGAGCAGCAGTTGTACGAGCAACTCAATTACAACCTGCTGTTTCGCTGGTTCGTCGGCCTGGACCTGAACCAGAAGGTCTGGAGCCTCGGCGT GCTGAGCCGCGACATCGCCACGCTGTTGAACGATGCGCGGGCGGTGCTGCTGATCCAGAAAATCATCGGTGAAGTGTTCTGTGGCGCCTTGCTGCAAATG CCCGAGTTCTCGTTGAACTTCGCGCTGCTGCACAGCTGGCTGGCCAAGCACGCCACGACATCGACCTTGAGCAATTGAGGCGGCCAAACGCCGTACAGAC GGCGACGGCGGTTTCGACGCGGTTCGACATTCTTGGAAATCTAGGGGGCGGTGTGGAGCATCTGTTCGATAGGGGGCGGCCGGGGCCGACCAGGCGCTGG
|
|
| DNA Sequence for Gene |
>P637_RS0110610
CTGCCGGTGTGCGGCTGGCTGGCGCTGGTTGCGCTGAGCCAGCCGTTGCTGGCCGAGGAGGGCGGCCCGGTGGAAGGCGAACCGGCGCAAGGCGAAGCCG CACCCGCGCGGTTGGTGGATGTGAATGAGTACTTCGTGCGCGGCAACACCGTGCTCGATGCCCGGGCCATCGAAGAAGCGGTGTATCCCTTCCTCGGCCC GCAGAAAGCCCTGGGCGATATCGAGGGCGCCCGCGACGCGTTGCAGAAGGTCTACCAGGCCCGCGGTTACCAGTCGGTGTTCGTCGAGTTGCCGGAGCAG AAGGTCGAGGACGGCATCGTCTACCTGCAGGTCAGCGAGACCAAGGTCGGACGGGTGCGAGTGGTGGGGGCCAAGCATTATTCGCCGGTGGAAATCCGCG ACGAGGTGCCGGCGCTGCAGGAAGGCCAGGTACCGGATTTCGCCAAGGTCCAGGGCCAGCTGGCGAGCCTGAACAAGACCCCCGGGCGCCAGGTCATGCC GCTGGTCCGCGAAGGCCAGCGCCCCGGCACCATGGACGTCGACCTGCAGGTGGAAGATCAGAACCCGTGGCAGGCCAGCATCGGCCTGAACAACGACTAC AGCGCCGACACCAAGCACCTGCGGGCGGTCACTAGCCTGGGCTACAACAACCTCTGGCAGCTGGGCCACAGCATTTCCCTGACCTATTTCACCGCGCCCG AGGACCAGGACAACGCCAAGGTCTGGTCCGGTTCCTACACCGCGCCGCTCAATGAGCGCTGGAGCCTGCAGTTCGCCGGCTACCAGTCCGACAGCAACGT CGCCACCATCGGCGGCAGCAACGTGCTGGGCAAGGGCCATTCCTACGGCCTGTCGCTGATCTACAGCCTGCCGGCGAGCGGCGCCTGGGCCAATTCGTTC TCGGTCGGGGTGGATTTCAAGGACTTCGAGGAAGAGCTGAGCCTGGGCGGCGAAAGCGACAAGGTGCCGCTCAAGTACGCGCCGTTCACCTTCGCCTACA ACGGCTTCCGCTACACCGAGACCTCCCAGCTAGGCCTGGGCCTGAGCCTGGTGGCCGGCACCCGCAGCCTGTTCGGCTACAGCAGCTCGGACGAGGACTT CGACTACAAGCGCTACCGCGCCAACCCCAGCTTCGCCGTGCTCAAGGGCGATGTGAATTACACCTACACCTTCGCCAACGATTGGCAGAGCGCATCCAAG GCCGCGTTCCAGCTGGCCTCGGGGCCGCTGGTGTCCAACGAGCAGTTCTCCGCCGGCGGCGCCACCTCGGTGCGCGGCTACCTGGCGGCCGAGCGCACCA GTGACGACGGCTACCTGTTTTCCCAGGAACTGCGCACGCCGTCCCTGGCCAAGTACCTGGGCGGTTATGTCAACGAATGGCGTTTTTACGCCTTCGCCGA AGGGGCCCAGATGTACCTGCGCGACGAGCTTCCAGACCAGGAGGCCGACTACAGCCTGGCCAGCGTCGGCCTGGGCACCCGCGCCAGCTTGAGCAAATGG CTTTCCGGCAGCCTGGACTGGGGTTACCCGCTGCTTGATGGACCGAACACCCAGAAACAGGACTCGCGCGTGCACTTCAGTGTGCAGGCGACGTTTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCTTTCACGGAGTAACTTTCATGCAGCGCTTACTGATTTCCCTGTTGATCTGCCTGGGCTTCGTGCTCCCGGCGACGGCCCAGGCGTGGTGGCAGGACGA CTGGCACTACCGCAAGCAGATCTCCATCGACACCACGCCGCAAGGCGCGGCCATCAATCAGGCCCTGGGCCGCACCGCGCTGCTGGTGCGCCTGCACACC GGCAACTTCAGCTTCGACGGGGTCAAGGAAGACGGCTCCGACCTGCGTTTCGTCAGCGCCGATGACAAGACCGTATTCAACCACCAGATCGAAAGCTTCG ACCCGCTGATGGGCATGGCCCTGGTCTGGGTCGATGTGCCGAACGTGGAGGGCGGCCAGCGCCAGGACATCTGGATGTACTACGGCAACCAGAAGGCCCC GGCCAGCGCCAACGGCCAGCTGACCTTCGACCCGAACTACATCGCCCTCTATCACTTCGACGGCGCCAACGGTACCCCGGCCAGGGACACCACGGCCTAC
|
|
| Amino Acid Sequence |
>membrane protein
MPVCGWLALVALSQPLLAEEGGPVEGEPAQGEAAPARLVDVNEYFVRGNTVLDARAIEEAVYPFLGPQKALGDIEGARDALQKVYQARGYQSVFVELPEQ KVEDGIVYLQVSETKVGRVRVVGAKHYSPVEIRDEVPALQEGQVPDFAKVQGQLASLNKTPGRQVMPLVREGQRPGTMDVDLQVEDQNPWQASIGLNNDY SADTKHLRAVTSLGYNNLWQLGHSISLTYFTAPEDQDNAKVWSGSYTAPLNERWSLQFAGYQSDSNVATIGGSNVLGKGHSYGLSLIYSLPASGAWANSF SVGVDFKDFEEELSLGGESDKVPLKYAPFTFAYNGFRYTETSQLGLGLSLVAGTRSLFGYSSSDEDFDYKRYRANPSFAVLKGDVNYTYTFANDWQSASK AAFQLASGPLVSNEQFSAGGATSVRGYLAAERTSDDGYLFSQELRTPSLAKYLGGYVNEWRFYAFAEGAQMYLRDELPDQEADYSLASVGLGTRASLSKW LSGSLDWGYPLLDGPNTQKQDSRVHFSVQATF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|