Pseudomonas sp. URMO17WK12:I8, F639_RS0101045
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I8 F639DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAAGCGCCAGCGCGCATTTCGCCGACCGCCTCGGGCGCCAGCGCTGGCTGATCGCAACGCCACAGGACGGCATTCGCTTCGACGGCCAAGCCTTCGAAT ATCACCGCCGTTGCCCGAACGATTGGCGCCAATGGGCACAACATGCCGAAGACCCCGGCGCTGAACTGTGGCGCACCTACTACCGGCACACCTTCAACCC GGCCCGGCTCAACCCCGATGCCCTGCGCCTTCACATGCCGGGGCGGTTTTGGCGGCACCTGCCGGAAGGCATGCTGATTCCACAGTTGGAGGGGTTGGCG CGGCAAGGCAAACAGCGCGATGGGCAAGCACTGGAAGTGGCCAGCCAGCGTGGCAAGAAGATCACCCGCTCCGGTGATTTGTGAAAAATTTGTAATAGAT TTGGCATACCACCTTCCCAAGGTGCGAAACATCCTGACAAAATTACTGCTAATCATTCTCATATTCACTTGTATTAGCAGTCATCAGGAGCCCACCCGTC
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| DNA Sequence for Gene |
>F639_RS0101045
ATGCTGTCGCCCCTCGCGCACACGCGCCCCCTGCCCGCCCGCAACCTGCTCGCCATGGCCGTGTGCATGGCCATCGTTACCCCGGCCCTGGCCGAAGATG CCCCAGCCACGCTTGAACTGGGTGCCACCGAAATCAGCTCGGACGCGCTGGGCAGCACCACCGAGGGTTCGGGGTCCTACACCACCGGTTCCATGTCCAC CGCCACAAAGTTGCCGATGAGCATGCGTGAAACGCCCCAGGCAGTCACCGTGATCACCCGCCAGCGGATGGACGACCAGGCCATGACCAGCGTAAACGAC GTGGTCAAGGCCACCCCCGGCCTGTTCCTCGACTATTCCAACGGCCCAGGCCGGCAGAGTTACTCGTCGCGCGGTTTTGACATCGATAACCTGATGTACG ACGGCATCCCCAGTGGCTACACCGGCTGGGTGGTCGGCGCCCAGCCGAACCTGGCGATGTTCGATCGAGTGGAAGTGGTGCGTGGCGCCACTGGCCTGGT CACCGGTGCGGGCAACCCGTCGGCGGCCATCAACTTCGTGCGCAAGCGCCCGCTGGCCGAGCAGAAGGTCACCCTCACCGGCGCCGCCGGCAGCTGGGAC GACTATCGCGGCGAAGTCGATGCCTCCAGCCCGCTCAATGACAGCGGCACCCTGCGCGGGCGCGTGGTCGCGTCCTACCGCGACGCCAACAGCTACGTCG ATGATGTCGAGGAAGACCACGGCCTGTTCTACGCGGTGACCGAGGCGGACCTGTCCGATGACACCAGCCTGATGCTCGGTCTCTCGCACCAGAAGGACAA GACCAACTACTTCTGGGGCGCCATGCCCACTGCCCTCGACGGCCATCACATGGGCTTCTCGCGTTCCTATAATCCGGGCACCGACTGGGAGAACAAGGAC CAGGAAATCAACACCCTGTTCGCCGAGTTGCACCACCGCCTGGCCAATGACTGGAAGCTTCAGCTCAACGCCAACTACTCGCAGCAGGATGCGACCTTCA CCGGCTCCTACCAGTCGCGCTGGGCCGGCCTGCAGGCGCCGCTGCAACGCACGGTCTACCAGTCCAAGCACCAGGAAAACCAGACTGGCCTGGACGGTTT CGTCAGCGGCCCGTTCGAGCTGCTCGGCCGCACCCACGAACTGGTGGTCGGTGCCAGCAAGCGCATCTACGACATGGACACCCGTAACTACAGCCCGTAC GACATGTTCTGGCCGATCAACGGCAGCAAACCGGACTTCGTGCACACCGGCAACCAACGCGAAGTCACCACCCAGGATGGCGTGTACCTGACCACTCGGC TGAACCTGGCCGACCCGCTCAAGCTGATACTCGGCGGGCGCCTGGACTGGTACGACTACGACAACCGCGATGGCGACGGCGACTACAAGGTCACCCGCAA CGTCACCAAGTATGCCGGCCTGATCTACGACCTCGACGACCACCATTCGGTGTATGTCAGCTACAGCGACATCTTCACGCCGCAAAGCAACAAGGACACT TCCGGTACGCCGGTGAAACCGATCGTGGGCAAGAACTACGAGGTCGGCATCAAGGGTGAATACTTCGACGGCGCCCTCAATGCCAGCGTCGCGCTGTTCC GCATCGACCAGGAAAACCGTGCCACCCAGGTCTTCGTCGCGGATTGCCCGCAGACGTCGTGCTACGAAGCCTCGGGCGAGGTACGCAGCCAGGGTATCGA CATGGAACTGCAAGGCGCCTTGACGCCCAACTGGCAGATCGGTGGCGGCTATACCTATGCGCGCGCGCACACCATCAAGGACGCTGCCAACCCTGCCAAC GTCAACCAGCGTTTCGACACCGACACACCGGAGCACCTGTTCAAGCTGAACACCGTGTACCACTTCCAGGGCCCGCTGGAAAAGCTGCGCGTCGGTGGCA ACATCTCCTGGCAGAGCCGTATCTACAACGACTTCACCGTCGCCGATGGCAGCGAGTACCGGTTGGTCCAGGGTGCCTATGCGGTTACCGACCTGATGGC CGGCTACCGGGTCGACCAGCACCTCGACCTGCAGCTCAACGCCAACAACGTGTTCGACCGCAAGTACTACTCGGCCATTGCCAGTTCGGTGGACTATGCC GGCGATACCTGGGGGGCGCCGCGCAACCTGATGCTGACGGCCAAGTACAGTTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGTTCGCCGTTACATCTTCAGCGCTTTTGAGACCGAGCGCCGCCCGCGCGGCGCATCGCGGATGAATCCGCTCCTACATCTGTTGCAACGTGGCCACGC CTGTTAAGCCAGGGTTGCCAGCCGGTTTGCACGGCTCAAGACATGCGCCAGGGCTGACAACCATGGCGTAACAGGTTCGGCACGTTGCAACAGATGTAGG AGCGGATTCATCCGCGATGCGCCGCGCGGGCGGCGCTCGGTCTCACAGGCACTACTGATTCAATCAGCCAAACAGCCTGGCCAGGCAGCCGAGCTTCTTC TTGTACGAACGCCGGGCTGCCAGTGCATCCTCAAGGCTCACCGCCAGGAACCGCGCCTGCTGGTTCGGCTGCATCTGCCCGATCAGGTCCAGGTCGGCAC TGATCACCGTGCCGATCATCGCGTAACCACCGCCCGACACCGCATCCCGGTGCAGGATGATCGGCTCCAGCCCTGCCGGCACCTGGATCGAGCCGATCGG
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| Amino Acid Sequence |
>TonB-dependent receptor
MLSPLAHTRPLPARNLLAMAVCMAIVTPALAEDAPATLELGATEISSDALGSTTEGSGSYTTGSMSTATKLPMSMRETPQAVTVITRQRMDDQAMTSVND VVKATPGLFLDYSNGPGRQSYSSRGFDIDNLMYDGIPSGYTGWVVGAQPNLAMFDRVEVVRGATGLVTGAGNPSAAINFVRKRPLAEQKVTLTGAAGSWD DYRGEVDASSPLNDSGTLRGRVVASYRDANSYVDDVEEDHGLFYAVTEADLSDDTSLMLGLSHQKDKTNYFWGAMPTALDGHHMGFSRSYNPGTDWENKD QEINTLFAELHHRLANDWKLQLNANYSQQDATFTGSYQSRWAGLQAPLQRTVYQSKHQENQTGLDGFVSGPFELLGRTHELVVGASKRIYDMDTRNYSPY DMFWPINGSKPDFVHTGNQREVTTQDGVYLTTRLNLADPLKLILGGRLDWYDYDNRDGDGDYKVTRNVTKYAGLIYDLDDHHSVYVSYSDIFTPQSNKDT SGTPVKPIVGKNYEVGIKGEYFDGALNASVALFRIDQENRATQVFVADCPQTSCYEASGEVRSQGIDMELQGALTPNWQIGGGYTYARAHTIKDAANPAN VNQRFDTDTPEHLFKLNTVYHFQGPLEKLRVGGNISWQSRIYNDFTVADGSEYRLVQGAYAVTDLMAGYRVDQHLDLQLNANNVFDRKYYSAIASSVDYA GDTWGAPRNLMLTAKYSF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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