Pseudomonas syringae DSM 10604, PSSR_RS0125420
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig57, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCGGCGTGTTGTCGAGCGGATCCGGCATGGTGATGCTCAGGCTTGACCAGCCTACATCCGGAAACTTGCGTCGCAGCGGGCCGACAGCGTCGGGCCAGT CCGGGGACTCGGCTTCGCCAGGCACAATGATGACCGCGCCTTCAGGGGCCTCAGTGTTGGCGGGTTTCCAGAGCGCGAGAAAGCTGTCGTCTCCGGCCTG AAGTTGCTGCTGATCTTCGCGCGGCAATTGACGTTCCAGCGCTATTGCGTCTTCCTGCGAGCGGCTGAGCAGCGGGGCTCTTTCGACGGGCGCTTGCGCA GCAGCGTCCTTGGCCGGGTCAGGGGTCGGGTCGGCTGCGAGGGCAGGCAAGGCGCAAGGCAGTATCAATGACAGAAACAATGCAGGAAACGTTGCGCGAA AGGTGTAGGACATCGGATATTCCAAGCCAGAAACTATCCCGGCAGCCTAGTGGGTTGATCGGCTTTTGTCAGGCCTGAGCCTGCGCGGCACACGGCCGTG
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| DNA Sequence for Gene |
>PSSR_RS0125420
ATACGCACACACGAGAGCGACATACTGATGATTCGTCTTCTGCGCACCGGTTTTATCGGCTGCCTGGCCTTGCTCTTGATGGCTCAGATGGCGAATACGC AGGCTGACGAACCTGAAACACCTGCCGTTGCGCAGTTGAGTTCAGCACAGCGCAACTGGCTCGACCAGCACGGCCCCTTGCGCGTAGGGCTGGTACTGCG CGCGCCTTACGCGCAGTTCGATCAACGCTTGCAGCAGTTGTCCGGCGCCAACGTCGACCTGATGAATGCGCTGGCTGCGACGCTGCCGGTCGAGTTGCTG TGGCGGAATTTTCCTGACCAGAGCGCGTTGGAGAACGCGCTGGCCAAGGGTGAAATCGACGTTGCGCCCGGCTTGATGCAAACACCCGCAGGCCTGCGTC TGTGGTTGTTTTCCGACCCGTATCTGCGTGTTTCGCAGCTGTTGATCGGCGAACGTGATGGCAGCACTGCCGTGGACCTGGAGAAACTCGACAGCCTTTC CCGCGTCGCGGTACGCATGCCAAGCACCACGGCCGACTACCTGCGTAGCAACTTTGCGCACCTCAACTTGCAAGGGGTGCCGCTGGAGCGCCAGGCCTTG CAATTGTTGCTCAGCCAGCAGGCACGTTATGCCGTGGTGGACGAAGCGCAACTCAGTCGTTTGCTGCGCGAGCCGGAGTTCGCCGGGCTGGCGGTGGTGG GGGATATCGGGCTGCCGCAATTGTTGCGGGTGGCTTCACGTCGCGACATGCCGGAGCTGGCCGCCATCGTCAGCGAAGCCTTGCGGGCGATCCCTGCCAA GGAGCTGGAGCAGCTGCATGCGCGCTGGATGCCGCTGACCCCGTCCCATTTCATCGAGTCGACCAAACTCTGGAAGAACCTGTGCATTCTGCTGCTGGTG ATGTTGCTGGCGTGTTTCGCCATCGTGATCTGGCAACGTCGCCAGCAGCAGGCGCTGGAGCAGGAGCTGCTGGCTGCGCGTGAAGAACTCGCCCGCCGTG TCGAAGAGGAGGAGGCGCTGCGTCTGGCGCAGTTTTCCATTGATCAAAGCACCGTCGGCATCCTCTGGGTCAACTGGGACAGCCGGGTGCGTTACGCCAA CCGGGCGGCGGAATCCATGCTGGGCTATGCGTCGGGGCAGGTGGTCGAGCGCCCGCTGATCGATTTCGAGCCCGGTCTGCACATGGATCGCTGGCTTAAC CTGTGGAAGAACGCACGCTCCAGCGAAGACAGCCCGCAAGTGTTCGAGACCCATTGCCTGCGCGCCGATGGCAGCCTGCTGCCTGTCGATGTCTCGTTGA GCTTCCTGCGCTTTCGCGATGCTGAATACCTGGTGGTGTTCCTCACTGACGTCAGCGAGCGCCGCCGCGCACATGAGCAGTTACGTGACTTGTCAGCGCA TCTGGAAAGCGTGCGTGAAGAAGAGAAGGCGCATATTGCCCGCGAGGTTCACGACGAGCTGGGTCAGATGCTGACGGTATTGAAGCTCGAGACTTCGATG TGCGAGCTGGCCTATGCCGACCTCGACCCTGGCCTGAGCGAGCGGCTGGAGAGCATGAAGCGTCTGATTGCTCAGTTGTTTCAACTGGTGCGCGATGTTG CCACGGCCTTGCGGCCACCGATTCTCGACGCTGGTATTGCATCGGCCATCGAATGGCAGGCGCGCCGTTTCGAGGCGCGCACGCAGATCCCGTGTCTGGT GCAGGTGCCGGACAATCTCCCGGCGCTCAGCGATGCCAGGGCCACAGGCATGTTCCGGATCCTTCAGGAGGCGCTGACCAATGTGATGCGCCATGCCCAG GCACACACGGTAGAGATCAGCCTGACGCTGCAGGACGGCATGATGTGCATGAGCATCGCCGATGACGGGCAGGGCTTTGCCATCGAGTCGGGCAGGGCGG TTTCGTTCGGTCTGGTCGGGATGCGCGAGCGGGTGCTGATGCTCGGCGGCCGACTTGAGCTGGACAGCGAGGTGGGTGAGGGCACAACCTTGCGCGCCTA TATCCCGCTGGACACCCTCGCACAGGAGCAAAAACAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCGTGTTTTGGTAGCCGAAGACCACACCATCGTGCGTGAAGGGATCAAGCAATTGATTGGTCTGGCCAGGGATCTGCTAGTGGTGGGCGAGGCCAGCAA TGGCGAACAGTTGCTTGAAACCCTGCGTCATGTGGCCTGCGAAGTGGTGCTGCTTGATATCTCCATGCCCGGCGTCAATGGCCTTGAGGCGATACCGAGG ATTCTCGCATTGACCAACCCTCCGGCCATTCTGGTGCTGTCGATGCACAATGAGGCGCAGATGGCTGCGCGTGCATTGAAGGTCGGCGCGGCAGGTTATG CCACCAAGGACAGCGACCCGGCGCTGCTGCTCACGGCCATTCGCCGGGTGGCGGCCGGCGGGCGTTATATCGATCCGGATCTGGCCGACCGTATGGTCTT TGAAGTTGGCCTCACCGACAGCCGGCCTTTGCACTCGTTATTGTCGGAGCGCGAGTTTTCGGTATTCGAGCGCCTCGCTCAAGGCGCCAACGTCAACGAC
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| Amino Acid Sequence |
>ABC transporter substrate-binding protein
MRTHESDILMIRLLRTGFIGCLALLLMAQMANTQADEPETPAVAQLSSAQRNWLDQHGPLRVGLVLRAPYAQFDQRLQQLSGANVDLMNALAATLPVELL WRNFPDQSALENALAKGEIDVAPGLMQTPAGLRLWLFSDPYLRVSQLLIGERDGSTAVDLEKLDSLSRVAVRMPSTTADYLRSNFAHLNLQGVPLERQAL QLLLSQQARYAVVDEAQLSRLLREPEFAGLAVVGDIGLPQLLRVASRRDMPELAAIVSEALRAIPAKELEQLHARWMPLTPSHFIESTKLWKNLCILLLV MLLACFAIVIWQRRQQQALEQELLAAREELARRVEEEEALRLAQFSIDQSTVGILWVNWDSRVRYANRAAESMLGYASGQVVERPLIDFEPGLHMDRWLN LWKNARSSEDSPQVFETHCLRADGSLLPVDVSLSFLRFRDAEYLVVFLTDVSERRRAHEQLRDLSAHLESVREEEKAHIAREVHDELGQMLTVLKLETSM CELAYADLDPGLSERLESMKRLIAQLFQLVRDVATALRPPILDAGIASAIEWQARRFEARTQIPCLVQVPDNLPALSDARATGMFRILQEALTNVMRHAQ AHTVEISLTLQDGMMCMSIADDGQGFAIESGRAVSFGLVGMRERVLMLGGRLELDSEVGEGTTLRAYIPLDTLAQEQKQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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