Pseudomonas putida GB-1, PputGB1_2020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida GB-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGTCGGCTACCTCGTCGCTGAGGGTCAGGTCGACCAGCACCTGCGGGTAGCGCGCGCTGAAGGCTGCCAATAGCGGCACGACGGTCAGCCGGGCATGGCC CAGCGCAGCGCTGACCCGCAAGCGCCCGCGTGGCACGCCCTGGTCAGTGATGGCCTCTTCGACTTCGAGCATGTCTGCCAGCACCCGCCGCGCGCCGCGC AAGTACGCCTCACCCTCGGGGGTGAGGGTGATCGCCCGGGTGGTGCGCAGCAGCAGGCGAGTGCCCAGGCGCTGTTCGGTGCGGGCGAGGATGCGGCTGA CCGCGGAGGGCGTCAGGTTCAGTGCCCGCGCGGCAGCCGATAGGCTGCCCTCGTGTGCCACCCTGGCAAAAACCTCCATCTCTCCAGATCTGCCACTGAA GTCCATTTGTGCCTCACAAGCAAAGGTGGTTCGCAAAAAAGCAGTCTAGTGCGACTTTGAAACAGATCGTAGCATTCGCGGCATAGATAAGGAGCTTGCC
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| DNA Sequence for Gene |
>PputGB1_2020
ATGCGTATCAATCCACCTCTCGTCGCACTCGCCATCGGTGCCTTTGGCATCGGTGTCACGGAGTTCGCCCCCATGGGCATGTTGCCCAGTATCGCCACCG ACCTTGGTGTTTCCATTCCTGCTGCCGGGCTGCTGGTCAGTGCCTATGCCATTGGCGTGCTGATCGGCGCGCCTTTGATGACCCTGGCCACGGTGAAGAT CCCACGGCGTTACCTGTTGATCGGGCTGATGGCCATTTTCACCCTGGGTAATTTGATGTCGGCCCTGGCCAGTGACTACGCCAGCTTGCTGGTGGCCCGC GTGGTCACCTCGCTCAACCACGGTGCTTTCTTCGGCATCGGCTCGATCGTCGCGGCCAGCGTGGTGCCGCCCGAGAAGCGCGCTGGGGCCGTGGCAGCCA TGTTCATGGGCTTGACCCTGGCCACCATCGGCGGAGTGCCGTTGGCGACCTGGTTTGGTGAAATGCTGGGCTGGCGCACGGCGTTCTGGGGTATAGCCGG GCTTGGCCTGGTGGCGATGACCACGCTCTGGTACGCGCTGCCCAATGTGGCCGCGCCCAAGGGGGATGGGGCCCTGGCCGAAATCCGCGTGCTAGGCCGT GGGCCGGTGCTGGCGGCGTTGTTGCTGACCGTGGTGGGTTCCAGTGCGATGTTCACGGTGTTCACCTACATTGCGCCGATCCTGCAAAGCGAAGCGGCGG CGTCCACCACCTTCGTGACGGCCATGCTGGTGTTGTTCGGTGTCGGCCTGACCCTGGGCAACGTGTGGGGCGGCAAGGCGGCGGATCGCTCGATCGATCG CACGTTGATCCTGTCGTTGGCCGTTTTGATTGCCGTGTTGCTGGTGTTCCCGCTGGTGCTGGACTGGCCGCTGCCGACGGCTCTGGCGATCCTGGTCTGG GGAGCAGCGAGCTTTGCTTTGGTTCCACCCCTGCAGATGCGGGTGATGGAAGCGGCCAAAGATGCGCCCAACCTGGCATCGGCAGTCAACATTGGCGCGT TCAACCTGGGTAACGCGATTGGCGCGGCACTGGGTGGCGCGGTGATCAATGCGGGGCTGGGTTACCCGGCGATTTCCCTGGCGGGCGCGGCGATGGCGGC GTTGGGGTTGGTGATGGTGCTGCTGTTTGCCTGGCGTGGGCGAGTAGTGGCTGCAGCGGGGCAGGTGGCGCTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACGCTGAGTTCGCGCCCCTACCGCGACACAAGGTCGCTTCCACAAGTGCAGCGCAAGCTCCAGGTGCTGCGCGGTCTCTGTGGAAGCGGCCTTATGTCG CGATGGGCTGCAAAGCAGCTACCGCCCCTGTACACACCCACCCCGCCCGCCGATAAAAGTCGTTGTTGGCGTTACGGCGTACCATTGCGGCCATGCAGGT GATAGGCCGGGCGCTCGCTCAGGCGTTCGTAGTAGTCGCGCACTGCCGGCAAGTGCGGGTGCTCGAATGGCGTTTCGAACCAGCGATTGACCGACAGGCC GATAGGGATGTCGGCCAGAGTGAACTGGCTGCCGGCCACATAGGCACCGGTGCCGGCCAGCTGACGGTCGAGGATGTGCATGTAACGCGACCACTCCGCG CAACCGGCCGCAAGCGCCTGTGGGTCTTGGTGGGCGGGTGAATGCCTGACCAGCGACATGAACGCGTAGCTCCACGAACGGTTCAGGTCCGAGGCCTGCC
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| Amino Acid Sequence |
>major facilitator superfamily transporter
MRINPPLVALAIGAFGIGVTEFAPMGMLPSIATDLGVSIPAAGLLVSAYAIGVLIGAPLMTLATVKIPRRYLLIGLMAIFTLGNLMSALASDYASLLVAR VVTSLNHGAFFGIGSIVAASVVPPEKRAGAVAAMFMGLTLATIGGVPLATWFGEMLGWRTAFWGIAGLGLVAMTTLWYALPNVAAPKGDGALAEIRVLGR GPVLAALLLTVVGSSAMFTVFTYIAPILQSEAAASTTFVTAMLVLFGVGLTLGNVWGGKAADRSIDRTLILSLAVLIAVLLVFPLVLDWPLPTALAILVW GAASFALVPPLQMRVMEAAKDAPNLASAVNIGAFNLGNAIGAALGGAVINAGLGYPAISLAGAAMAALGLVMVLLFAWRGRVVAAAGQVAL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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