Pseudomonas sp. URHB0015, N526_RS0103090
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAGACGCGGGTTAACATAAAGCTCGACTTGCACACCGGAGGTGCAAAAAAATCAATCGAATTGCCCTTGAAGTTGATGGTCATGGGCGATTACAGCAAT GGTCGCGAGCAGCGTGCACTGTCCGAGCGGAGCAAAATTGGCGTCAATCGGAATAACTTCGATAGCGTGCTGGCCGAATTTTCGCCTGCCTTGAAATTCG CCGTGGACGATGTGCGGGGGGAGGGCAGGGCCGAGACCGCGGTTGAGTTAAGCTTTCAGTGCATGAAAGATTTCGAGCCGGAACAAGTGGCTCGGCAAAT TCCGCAACTTCGCGCTTTATTAGCCATGCGTAACCTATTGCGCGATCTCAAGTCCAATCTTCTGGATAACGCGACCTTTCGCTACGAGTTGGAACGTATC CTCAAGGATGATGCGCTGAGTGACGAATTGCGCGCTGAACTGGCCGCCCTGGCACCTGCGCAAGTTAACTAATTCAAGTCGGTTCGTCTAAAAGGAAGTT
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| DNA Sequence for Gene |
>N526_RS0103090
ATCGCAATGTCCCCGGAAAATTCAAACGTGCAATCGCGCGGCACTACAGTGTTGTCCGAGAAAAGTGTATACGCCGGATTATTTGGAAAAATCAATCTGA GTCCGGTCGAATCATTGGCCGGTATCGACAACTTTCAGAGCGTGGAAGGGCTCGCGGAAGCGACTGCCGATGAACGTGTAACGGCAGCGGTCAATGTTTT TCTGAAGTTGCTCCAACAATCCTCGCAAAAGGTTGAGCGCCTGGATCGGGCCCTGTTGGATGAGCACATTGCAGCGCTGGATGCACAGATCAGTCGCCAA CTCGATGCGGTGTTGCATCATCCGGATTTTCAGCGAGTTGAATCTACCTGGCGCGGAGTCAAGTCGCTGATTGATCAAACCGATTTCCGCCATAACGTGT GTATCGAACTGCTGGATATCAGCAAAAACCATCTGGTTCAGGATTTCGATGACGCACCGGAGATTGCCCAAAGCGGTTTGTACCTGCATACCTACATCCA GGAATACGATACGCCGGGTGGCGAGCCGATTGCTGCGGCTATATCCAACTTCGAGTTCGACCGCAATCCCCAGGACATAGCGCTGCTGCGCAACCTCTCC AAGGTGTGTGCTGCGGCGCACATGCCTTTTATCGGTTCGGTCGGTCCGGCTTTCTTTGGCAAGGAGTCGATGGAAGAAGTGGCCGCGATCAAGGACATCG GCAACTACTTTGATCGCGCCGAGTACATCAAGTGGAAATCGTTTCGCGAGAGCGACGACGCGCGCTACATCGGCTTGCTGATGCCGCGGGTCTTGGGCCG TTTGCCTTACGGCCCGGATACGATGCCGGTGCGCAACTTCAATTACATCGAAAACGTCAAAGGGCCCGACCACGACAAATACCTGTGGACCAACGCTTCT TATGCGTTCGCCGCCAATATGGTCAAGAGTTTCATTGCCAATGGCTGGTGCGTGCAGATTCGCGGGCCGCAGGCGGGTGGCGCGGTCACTGACCTGCCAA TCCATCTGTACGATCTGGGCACCGGTAATCAGGTGAAAATCCCATCAGAGGTGATGATTCCGGAAACGCGAGAATTCGAGTTCGCCAACCTCGGCTTCAT CCCTCTCTCCTATTACAAGAATCGCGACTACGCCTGCTTTTTCTCTGCCAACTCGGCACAGAAGCCCGCGCTGTATGACGCGGCAGATGCCACTGCCAAT AGCCGGATCAACTCGCGCCTGCCTTACATCCTCCTGCTGTCGCGCATTGCCCACTACATGAAACTGATTCAGCGCGAAAACATTGGTACGACCAAGGACC GTCGTTTGCTTGAGTTGGAGTTGAACAAGTGGATACGGGGGCTAGTCACCGAAATGACCAACCCGGGTGATGACCTGCGGGCTTCACACCCACTGCGTGA AGCGAAGGTCGAGGTCGAGGATATAGAGGACAACCCTGGTTTTTTCCGCATCAAGCTGTTCGCCGTGCCGCACTTCCAGGTGGAGGGCATGGACGTCAAC TTGTCGCTGGTCTCCCAGATGCCCAAGGCCAAGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCACCTGAGCAGCATGCCAATTTGCAGGGAAACGCATACATGAAAATCGACCGCCCCTTGTGGGCAGCGGGGGCTTTGCTGTCTCCGCAGCAGTTCCAG CAACAGGCGCGTTGGGAGGCCTGGGCCAATGAGCAGTTGGCCCATCTTTCCCTGGTGCACCCTTGGGGGGTGCAGGCCGTGGACTTTGACCCTGAAGCCT TGCGCCTGGGCAAACTCAAGGCGACGTTGCTGCGGGTCCGCATGCCGGATGGCACATTGATCGATAACCGCTTGAACCTGCGGCCCCTGGTCAAGGAGTG ACGGATGACCGAATCCAACCCTTCGCTGTATGAAACGCTGCTGCAGAATTTTGACGCTGACCTGCCTCTCTATCAGGTTGACGAAGATGACCACTGCATG TTGTCAGTGCTGGACAACCTGCAGCGCGTCCTCAATAGCCGCGCCGGCACCCTGGCGCATCTGCCTGATTATGGGCTTCCCGATATGGGGCGGGTTCTGC
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| Amino Acid Sequence |
>EvpB family type VI secretion protein
MAMSPENSNVQSRGTTVLSEKSVYAGLFGKINLSPVESLAGIDNFQSVEGLAEATADERVTAAVNVFLKLLQQSSQKVERLDRALLDEHIAALDAQISRQ LDAVLHHPDFQRVESTWRGVKSLIDQTDFRHNVCIELLDISKNHLVQDFDDAPEIAQSGLYLHTYIQEYDTPGGEPIAAAISNFEFDRNPQDIALLRNLS KVCAAAHMPFIGSVGPAFFGKESMEEVAAIKDIGNYFDRAEYIKWKSFRESDDARYIGLLMPRVLGRLPYGPDTMPVRNFNYIENVKGPDHDKYLWTNAS YAFAANMVKSFIANGWCVQIRGPQAGGAVTDLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDAADATAN SRINSRLPYILLLSRIAHYMKLIQRENIGTTKDRRLLELELNKWIRGLVTEMTNPGDDLRASHPLREAKVEVEDIEDNPGFFRIKLFAVPHFQVEGMDVN LSLVSQMPKAKA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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