Pseudomonas putida GB-1, PputGB1_0321
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida GB-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGTGGGAGCTGGAGGGCCCGACACCGATCTTGAACAGGTCGAACACGCTGATGGCCATTGTCGAATCACCTCTTGCTGGGCTTGTCTCTGCGCGCCATGC GCAGGGCGGGGCAGCTGCTAGGCTGAAACAGCGGGCCGCCTTGAATGCCAGCATCATCGGGCTTTTACCGCCCCCCTCGCCGTCTGCAACCGACGTACTT TTGTCCAGCAGCGCCGCGCTGTTCGTTGCCTTCTCCACGCCGTTTTCCAGCGGCCTGGTGACGCAAAAATGCGGCCGAAGGGGTGGAAAAATCCATAAGC GACATCGCCCGTACTGGATACGACCCGTTCCGTACTGGATACGACCCTACCAGTAGGCGATTGCCCGGCGCTGGAGGATTATCGAAAGCGACTCGTAAAG CACGGCCACGCATCCTGCCCTCTGCAGGCCTGGTCGACCGGACCTTCAGAAAGCCCGGCGACCCACGCGAACCCGAAGACAAAATCACAGGAGTCCATCC
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| DNA Sequence for Gene |
>PputGB1_0321
ATGAAAGGTTCACCCTCGCTGTTGCTGGTTGCGTTGCTGTCCACGCCATTGCTGGCCCAGGCCGCCGAACCCGAGCAGTGTCAGACGGTACGTTTCTCCG ATGTCGGCTGGACCGACATCACAGTCACGACCGCGACCACCAGCGTTGTGCTCGAAGCCCTGGGTTACAAAACCCACACCACCATGATCTCGGTACCGGT GACCTACAAGTCGCTGGCCACCGGCAAGGACCTGGACGTGTTTCTCGGCAACTGGATGCCGACCATGGAAAACGACATCAAGCAGTACCGCGACGCCGGC ACGGTGGAAACCGTGCGCGCCAACCTGGAAAACGCCAAGTACACCTTGGCCGTGCCCCAGGCGCTGTATGACAAGGGCCTGAAGGATTTCAGCGATATTC CCAAGTTCAAGAAAGAACTCGACAGCAAGATCTACGGCATCGAACCCGGCAACGATGGCAACCGCACCATCCAGAGCATGATCGACAAGAACGCCTTCGG CCTGAAGGACGCCGGTTTCAAGATCGTGCAATCGAGCGAGGCCGGCATGCTGTCGCAGGTCGACCGCGCGCAGAAGCGTGGCGAAGCGCTGGTGTTCCTG GGCTGGGAACCGCACCCGATGAACACCCGCTTCAAGATGCAGTACCTGACCGGCGGGGACGAATTCTTCGGCCCCGACTTCGGCAAGGCCACCGTGCTGA CCAACACCCGCAAGGGCTACGCGCAGGAGTGCAGCAACGTTGGCCAGCTGTTGAAGAACCTGTCGTTCGAGCTCAAGGATGAAAGCACCATGATGGGCTA TGTCCTGGACGACAAGATGAAACCCGAAGCCGCCGCCAAGAAATGGATCAAGGACAACCCAGGCAAGCTGGATGCCTGGCTGGCCGGCGTGACCACCGTG GATGGCAAACCTGGCCTGGAGGCGGCCAAGGCCAAGCTCACGCAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGAACCACGCAATAGCGCTACCTCGGGGCAGGACCGTGCCTGCCCCGGGTTGATTTCAATCTATGCAGGTGGAAGCTCGCTATCATGCTTATCGATCAGA AAATACCCCTGGGCCAGTACATCGCGTCGTTCGTCGAGTGGCTGACCCAGAACGGCGCGAATTACTTCGACGCCATCGCGCAAGGCCTGGAGTTCATGAT CCATGGCGTCACCAACGCCCTGACCTGGTTCAACCCGTTCGTTCTCATTGCCCTGTTCGCCGCCCTGGCGCACTTGATCCAGCGCAAATGGGCGCTGACC GTGTTCGTTGCCCTATCGTTCCTGTTGATCCTCAACCTGGGCTACTGGCAGGAAACCATGGAAACCCTGGCGCAGGTCACCTTCGCCACGGTGGTGTGCG TGGTAATCGGCGTGCCGCTGGGCATCCTCGCCGCGCACAAACCGATGTTCTACACCGCCATGCGGCCGGTGCTCGACCTGATGCAAACGGTGCCCACCTT
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| Amino Acid Sequence |
>choline ABC transporter periplasmic binding protein
MKGSPSLLLVALLSTPLLAQAAEPEQCQTVRFSDVGWTDITVTTATTSVVLEALGYKTHTTMISVPVTYKSLATGKDLDVFLGNWMPTMENDIKQYRDAG TVETVRANLENAKYTLAVPQALYDKGLKDFSDIPKFKKELDSKIYGIEPGNDGNRTIQSMIDKNAFGLKDAGFKIVQSSEAGMLSQVDRAQKRGEALVFL GWEPHPMNTRFKMQYLTGGDEFFGPDFGKATVLTNTRKGYAQECSNVGQLLKNLSFELKDESTMMGYVLDDKMKPEAAAKKWIKDNPGKLDAWLAGVTTV DGKPGLEAAKAKLTQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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