Pseudomonas fluorescens SBW25, PFLU5960
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 286 | 306 | - |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 120 | 274 | 2.4E-23 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 119 | 293 | 1.3E-42 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 125 | 274 | 4.4E-31 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 292 | 538 | 6.3E-113 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 298 | 538 | 5.84588E-113 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 298 | 533 | 1.9E-75 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 127 | 274 | 3.17409E-41 |
| PANTHER | PTHR33121 | CYCLIC DI-GMP PHOSPHODIESTERASE PDEF | - | - | 109 | 543 | 0.0 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 129 | 284 | 2.12E-35 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 294 | 550 | 3.7E-99 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 297 | 543 | 2.62E-87 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 113 | 282 | 3.3E-38 |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 293 | 548 | 7.0E-89 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.