Pseudomonas fluorescens SBW25, PFLU5903
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAGGCAAACCCTGGCGATTCCTCAGGCGCTTGCACGAACACCCCCTTGCCAGGCTGCACACTCACCACTCCCAAGGCACTCAGTGACGACAACGCCTCGC GCAACGACGCCCGGCTCACGCCCAACTGCACGGCCAGGTCACGCTGGGACGGCAACGCATCGCCCGGCCCGAAGCCTTGCTCCTTGATCAGTTTGCGGAT GGCCTGCAGGGCCGCTTCCGGTACGGCTTGGGCGATGGAATTCATAAAAAACTCAAGGTTCCAGTCAACTGAGCGGCTAGTTGTAAAGCTATTCGCGGCA GGCGGCAAGCCACGCCCCAAAGGCGCTCGCCCGATTCTGCCAGCGCTCGAAAAGGGTGCGAAAAGCCCGACAACTGTTCAGACCAGTAAGACCACCTCGG CTCAATAAACACCAGCCTTACAGACGATCTGAGCGGTACTGGCATGGGCTGTGCACTGGGCAAATCCAGAAAATCCCTTCGCCCTTCTCGGAGAGTTGCC
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| DNA Sequence for Gene |
>PFLU5903
ATGACCAAGCGCTACAGCGCCCTGCTTACTGCCCTGTTCGCCAGCCTGATGCTGAGCCAGGCACCCGCCCAGGCCAATGGTCTGGACGACATCGTTGCCC GTGGCACCCTAAAGGTCGCCGTGCCCCAGGACTTCCCGCCGTTCGGCTCGGTCGGCCCTGACATGAAGCCTCGCGGCCTCGACATCGACACCGCCAAGCT GTTGGCCGACCAGCTCAAGGTCAAGCTGGAGCTGACCCCGGTGAACAGCACCAACCGTATTCCGTTCCTCACCACCGGCAAGGTCGACCTGGTGATTTCC AGCCTGGGCAAGAACCCCGAGCGCGAAAAGGTCATCGATTTCTCCAAGGCCTACGCGCCGTTCTACCTGGCCGTGTTCGGTCCGCCTGATGCCGCCATCA GCAGCGTCGACGACCTCAAGGGCAAGACCATCAGCGTGACCCGTGGCGCCATTGAAGACATCGAGCTGACCGCCGTCGCGCCCAAGGAAGCCACGATCAA ACGCTTCGAAGACAACAACTCGACCATCGCCGCCTACCTGGCCGGCCAGGTCGACCTGATTGCCAGCGGTAACGTGGTGATGGTGGCGATCAGCGAGCGC AACCCGAAACGCGTGCCGGCGTTGAAGGTGAAGCTCAAGGATTCCCCCGTGTACGTGGGCGTGAACAAGAACGAGCCCGCACTGCTGGAGAAGGTCAATC AGATCCTGGTTGCGGCCAAGGCCGACGGCAGCCTGGAAAAGAACGCGATGCAGTGGCTCAAAGAACCATTGCCTGCTGATCTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCGGAGCTGACCCATGGCCTATCAATTCGACTTTGTGCCGGTGCTGGCCAATACCGACCTGCTGCTGCGCGGCGCACTGTTCACCCTTGAGCTGACAGC GATCGGTGCGATCCTGGGGGTAGCCCTGGGCACCGTCGGAGCGGTGGTGAGGGCGTGGAAGATCCAGCCCTTCGCCTGGTGCTTCGGTGTGTATGTCGAG TTGATTCGCAACACACCGTTCCTGGTGCAGCTGTTCTTCATCTTCTTCGGCCTGCCGTCATTGGGGCTGAAAATTACCGAGTGGCAAGCCGCAGTGCTGG CGATGGTGATCAACTTGGGAGCCTACTCCACCGAGATCATCCGCGCCGGCATCCAAGCCATTCCCCGCGGGCAACTGGAAGCCGCCGCCGCACTGGCCAT GACCCGTTTCGAAGCCTTCCGTCATGTGGTGCTGCTGCCGGCGCTGGGCAAGGTGTGGCCGGCGCTGAGCAGCCAGATCATCATCGTGATGCTCGGTTCG
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| Amino Acid Sequence |
>putative ABC transporter substrate-binding protein
MTKRYSALLTALFASLMLSQAPAQANGLDDIVARGTLKVAVPQDFPPFGSVGPDMKPRGLDIDTAKLLADQLKVKLELTPVNSTNRIPFLTTGKVDLVIS SLGKNPEREKVIDFSKAYAPFYLAVFGPPDAAISSVDDLKGKTISVTRGAIEDIELTAVAPKEATIKRFEDNNSTIAAYLAGQVDLIASGNVVMVAISER NPKRVPALKVKLKDSPVYVGVNKNEPALLEKVNQILVAAKADGSLEKNAMQWLKEPLPADL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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