Pseudomonas fluorescens SBW25, PFLU5872
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCTCAATGGCTATAAAGACATCCCGATCAACCCATGGTTGTCGTTCTACGGCATGGCCGGGGTGGGCGTCGCACGCATTGAAGCCGAGGGCTATCAAA CCAATGAGACCCGCCGTTTCGCCAGCAATCGCCAGCATCATTTCGCCTACAGCGTAGGCATGGGGCTGGAAGCCAAGGTCAGTGAGCAAATCACGCTGGG TGCCGGCTATCGTTACATCGCAATGGGCGATATTGAAACCGGCTACAACACCTTCGCAAACCGTGTGAACGCTCGGGATGAGCAACTCAAAGGTAAGCTC AAGGAACAGAATGTGTTTCTGGAGGCGCGCTATTCCTTCTGAAACCCAGTAGGAAATGCCGCTTTCGAAGCGGCATTTTTTAACCGGACGGTGACGATTC ATTCACAGGCGACAGGCTATATTCAGTCAAGCCGTGCAACCATGCCGGTACTGATACCTCGCTTACTCATCGCCAATCTGAAACGGATGCCTTCGTCGTC
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| DNA Sequence for Gene |
>PFLU5872
ATGAGCCAACAGCCCTTCCTGCCGTTTTCCAAACCCACCATTGATGAAGCCACCATCTCGGCGGTCGGCGATGTACTGCGTTCGGGCTGGATTACCAGCG GGCCGAAAGTGCAGGCCTTCGAAGCGCAGTTGTCGGAATACTTTGGCGGACGGCCGGTGCGCACGTTCAACTCGGGCACCTGCACCATGGAGATTGCCTT GCGCATCGCCGGTATTGGGCCAGGCGATGAAGTCATCACCACGCCGATCTCCTGGGTGGCCACGGCCAACGTGATCCTGGAAGTGGGTGCCACACCGGTG TTTGCCGATATTGACCCGGTGACCCGCAATCTCGACCTGGTCCAGGTGGAGGCTGCCATCACCCCGCGCACCAAGGCGATCATCCCGGTGTACCTGGCCG GCCTGCCCTTGGACATGCCGATGCTGTATGCACTGGCCAACAAGTACAACCTGCGCATCGTCGAGGACGCAGCGCAGGCGCTGGGTTCCAGCTGGGATGG CGAACGTATCGGCGCCACTGGGGATTTCGTGTCGTTCAGCTTCCAGGCCAACAAGAACATCACCTCTTCCGAAGGCGGTTGCCTGGTGTTGAACAACGCA GAGGAAGCGCGGCTGGCAGAGAAGTACCGCCTGCAAGGCGTTACCCGCAGCGGCTTCGATGGTCTGGACGTGGACGTGCTGGGCGGCAAGTTCAATATGA CCGACATCGCCGCCGCCATTGGCCTGGGGCAATTTGCCCATATCGAGAAGATCACCGCGCACCGCCAGCACCTGGCGCGCCACTATTTCAAATGCTTTGG CAGTGATTTCGAAGAGCAATACGGCGCACAGCTGCCGCCGGCTGATTTCGAAAACAGCAACTGGCACCTGTTCCAGTTGGTACTGCCGGAGCGCCACGAC GGCCTACCGGCCCGCGCCACCTTCATGGAGCAGATGCAGGCCCACGGGGTCGGCATTGGCTATCACTATCCGCCGATCCACCTGCTGAGCCTTTATCGGG CGCAGGGGTTCAAGGAAGGTATGTTTCCGGTGGCGGAGAAGGTGGGGCGTTTGATCGTGTCACTGCCGATGTTTACGGCGATGACTGAGGCGGATGTGGA GCGCTCGGTGGCAGCGGTGAAGGCGGTTCTACAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACACATTGCGGGAGCCGGATAACCGGCTCCCGCAACAGGATCACTCGCCGATGGCGGCTTTGTAGCCAGCAGCATCCAGCAGTTTTTCCAGGTCAGCCG GGTTGCCAGGCTTGAGCTTGAAGATCCACGCGCCGTACGGGTCGGAGTTGAGCAGCTCGGGGCTGCCGCTCAGTTCTTCGTTGACGGCAATCACTTCGCC CGCAATCGGAGCGTAGATATCCGAGGCGGCCTTCACCGACTCAACCACGCCCGCTTGGCCCGCAGCGTCAAACTGAGCGCCAACTTCGGCCAATTCAACA AACACCACATCACCCAACGCTTCCTGAGCATGGTCGGAAATACCGACGGTCACAGTGCCGTCAGCTTCCAGGCGCGCCCATTCGTGGCTTTCGGCGAAAC GCAGGTCGGCAGGGATATCGCTCATAGTCTGTGTCCTCAAGAAGTAATGTCAGCGGCCTTCGGCCTGCCGGAAATAGGTTAGATCAAGGTTTTGCCATGG
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| Amino Acid Sequence |
>putative aminotransferase
MSQQPFLPFSKPTIDEATISAVGDVLRSGWITSGPKVQAFEAQLSEYFGGRPVRTFNSGTCTMEIALRIAGIGPGDEVITTPISWVATANVILEVGATPV FADIDPVTRNLDLVQVEAAITPRTKAIIPVYLAGLPLDMPMLYALANKYNLRIVEDAAQALGSSWDGERIGATGDFVSFSFQANKNITSSEGGCLVLNNA EEARLAEKYRLQGVTRSGFDGLDVDVLGGKFNMTDIAAAIGLGQFAHIEKITAHRQHLARHYFKCFGSDFEEQYGAQLPPADFENSNWHLFQLVLPERHD GLPARATFMEQMQAHGVGIGYHYPPIHLLSLYRAQGFKEGMFPVAEKVGRLIVSLPMFTAMTEADVERSVAAVKAVLQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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