Pseudomonas fluorescens SBW25, PFLU5680
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCGCGGCGCGCATGGGGCCGACGGTGTGAGAACTCGAAGGCCCGATGCCGATCTTGAACAGGTCGAAAACGCTGATAGCCATTGCCGTGAAACTCCTC GGTGAGTACGGGCCAGGCACCAAGGAGCTGCTACGCTCAGATCGCCCAGATGGCGGCATCATCAAGCTTTTATCCGCCCTCACGGCGTCTCACACCGACG TAACCATGCTCACCAGCGCCGCCCGTGCGCAATCACCTGTTTTGGCCGTTTTTGGCGGTGCAGATGGGCAAAAACTGCAGTTTTGCCTTGGGAAAAACCT GTAAGCGACGTCACCGACACTGGATGCGACCCTGCCTGTACTGGATACGACGCCCCCTGTAGGCGTCAGATTTTCACTGGTACATGATCAGTCTCGACTC GTTTGCAAGGCACCGTGCCAGAGCTGTTGTCGCACGCACCAACCGCAACACTTATAAAGCGCGGCGAAGGCCGCCAGAAAAAACACAGGAGTCTAGCCCC
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| DNA Sequence for Gene |
>PFLU5680
ATGAAAGCTTCACCCTCGTTGTTGTTGGCCGCCATGCTGAGTCTGCCAGTCCTGGCGCACGCTGCAGAACCGGCACAATGTCAGACCGTCAACTTCTCCG ATGTCGGCTGGACCGACATCACCGTCACTACCGCGACCACCAGCGAAGTCCTCAAGGGCCTGGGCTACAAGCCGCGCACCACGATGATTTCGGTACCGGT GACCTACAAGTCCCTGGCCGACGGCAAGAACATGGACATTTTCCTCGGCAACTGGATGCCGACCATGGAAAACGACATAAAGCAGTACCGTGATGCCGGC ACCGTGGAAACCGTGCGCGCCAACCTGGAGAACGCCAAGTACACCCTCGCGGTCCCGGAAGCGCTGTACAACAAAGGCCTGAAGGACTTCGCCGATATCG CCAAATTCAAGGATGAGCTGGGCGGCAAGATCTACGGCATCGAGCCGGGTAACGACGGCAACCGCACCATCCAGACCCTCATCGACAAAGACGCCTTCGG CCTGAAAACCGCCGGTTTCAAAGTCGTCGAGTCCAGCGAAGCCGGCATGCTCTCCCAGGTTGAACGTGCCACCAAGCGTGACCAGGCCATCGTGTTCCTC GGCTGGGAACCGCACCCGATGAACACCCGCTTCAAGATGAAGTACCTGACCGGGGGTGACGATTCGTTCGGCCCCAACTACGGCCAGGCCACCATCTACA CCAACACCCGCAAGGGCTACACCCAGGAATGCAGCAACGTGGGTCAGTTGCTGAAAAACCTGTCGTTCACCCTGAACATGGAAAGCACCCTGATGGGTAA CGTCCTGGACGACAAGATGAAGCCCGACGCCGCCGCCAAGGCTTGGCTGAAGAAGAACCCGCAAGTCCTCGACACTTGGCTCGCCGGTGTCACTACCGTT GACGGCAAACCCGGTCTGGAAGCCGTAAAAGCCTACCTCGACAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCAGCTGACCCCGGGCCGGTGCGCTGGCCCGGGATGTTTTCCCCTTCGCATGTGGACATTCACTACCATGCTGACTGAACAGAAAATCCCACTAGGCCA GTACATCGCTGCCTTCGTCGAATGGTTGACCCAACACGGCGCCAACTACTTCGACGCAATCGCATCGACACTGGAAACGATGATCCACGGCGTGACGTTT GCGCTGACCTGGTTCAATCCGCTGGCATTGATCGGTCTGATTGCGCTGCTGGCTCACTTTATTCAACGTAAATGGGGACTGACTGTTTTTGTCATCGCCT CCTTCCTGCTGATCCTGAACCTGGGGTACTGGCAGGAAACCATGGAGACCCTGGCGCAAGTGCTGTTCGCCACCCTGGTCTGCGTGGTGATCGGTGTGCC GCTGGGCATTGTTGCCGCGCACAAGCCGATGTTCTACACCCTGATGCGGCCGGTGCTCGATCTGATGCAGACCGTACCGACCTTCGTCTACCTCATCCCT
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| Amino Acid Sequence |
>putative glycine betaine/L-proline ABC transporter substrate-binding protein
MKASPSLLLAAMLSLPVLAHAAEPAQCQTVNFSDVGWTDITVTTATTSEVLKGLGYKPRTTMISVPVTYKSLADGKNMDIFLGNWMPTMENDIKQYRDAG TVETVRANLENAKYTLAVPEALYNKGLKDFADIAKFKDELGGKIYGIEPGNDGNRTIQTLIDKDAFGLKTAGFKVVESSEAGMLSQVERATKRDQAIVFL GWEPHPMNTRFKMKYLTGGDDSFGPNYGQATIYTNTRKGYTQECSNVGQLLKNLSFTLNMESTLMGNVLDDKMKPDAAAKAWLKKNPQVLDTWLAGVTTV DGKPGLEAVKAYLDK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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