Pseudomonas fluorescens SBW25, PFLU5649 (soxA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCGAACATGTTCTTCAACTGCGGTTGGGGCACCGGTGGCTTCAAGGCCACGCCGGGCTCAGGCAACGTGTTTGCCGCCAGCCTCGCCAAGGGCGAAATGC ACCCGTTGGCCGCGCCATTCTCCATCGACCGTTTCCACAACGGTGCGTTGATCGACGAACACGGCGCTGCGGCCGTCGCCCACTAACAGGAGAAATTCCC TATGTTGCATATCTTCTGTCCTCACTGTGGCGAACTGCGCTCCGAAGAGGAATTCCACGCGTCCGGCCAAGCGCACATCCCGCGCCCGCTGGACCCGAAC GCCTGCACCGATGAAGAGTGGGGCGACTACATGTTCTTCCGCGACAACCCCCGTGGCCTGCACCACGAGCTGTGGATTCACGCCGCCGGTTGCCGCCAGT ACTTCAACGCGACCCGCGACACCCTGACCTACGAAATTCTTGAAACCTACAAGATCGGCACCAAGCCGCAATTCACCGCCAAGGCTGCTGGAGAGAAGGT
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| DNA Sequence for Gene |
>PFLU5649
|soxA
ATGAGCCAGACCAATCGCCTGTCCAACGGTGGCCGCATCGACCGCAATAAAGTCCTGACGTTTACCTTCAACGGCCAGAGCTACAAAGGCTTTGAAGGTG ACACCCTGGCCGCAGCCCTGCTGGCCAACGGCGTCGACATCATCGGCCGCAGCTTCAAGTACTCGCGCCCTCGTGGCATCTTTGCCGCCGGTGCCGAAGA GCCGAACGCCGTGCTGCAGATCGGTGCGACCGAAGCCACGCAAATCCCTAACGTGCGCGCCACGCAACAGGCGCTGTACCAGGGGCTGGTCGCCACCAGC ACCAATGGCTGGCCGAACGTCAACAATGACGTGATGGGCATTCTCGGCAAGGTCGGCGGCAAGCTGATGCCGCCGGGTTTCTACTACAAGACCTTCATGT ACCCGCAATCGTTCTGGATGACCTACGAGAAGTACATCCGCAAGGCGGCTGGCCTTGGCCGCTCGCCGACCGAGAACGATCCGGACACCTACGACAACTT CAACCGTCACTGCGACGTGCTGGTGGTGGGCGCAGGCCCCGCCGGCCTGGCCGCTGCCCTGGCGGCTGCGCGCAGCGGTGCCCGCGTGATCCTCGCCGAT GAGCAGGAAGAGTTCGGCGGTTCGCTGCTGGACTCGCGCGAAAGCCTCGACGGCAAGCCGGCTGCGGAATGGGTTGCCAGCGTTATCGCGGAACTCAAGG CGCTGCCGGACGTGGTGCTGTTGCCTCGCGCCACCGTCAACGGCTACCACGACCACAACTTCCTGACCATTCACGAACGCCTTACCGACCACCTCGGTGA CCGTGCGCCGATTGGCGTGGTGCGCCAGCGTATCCACCGTGTCCGCGCCAAGCGTGTGGTGCTGGCGACCGGCGCGTGCGAGCGCCCGCTGGTGTACGGC AACAACGATGTGCCGGGCAACATGCTCGCTGGTGCAGTCTCGACTTACGTGCGCCGCTACGGTGTAGCACCGGGCAAGAAACTGGTGTTGTCGACCAACA ACGACCACGCCTACCGCGTTGCGCTGGACTGGCTCGACGCTGGCCTGCAAGTGGTGGCAGTGGCTGATGTGCGCCACAACCCACGCGGCGCCCTGGTTGA AGAAGCCCGCGCCAAAGGCATTCGTATCCTCACCGGCAGCGCCGTGATCGAAGCCCGTGGCAGCAAGCACGTCACCGCTGCCCGTGTGGCCGCGATCGAT GTGAAAGCGCATAAAGTCACCAGCCCAGGCGAGTGGCTGGAGTGCGACCTGGTGGCCAGCTCCGGCGGCTACAGCCCGGTGGTCCACCTGGCCTCGCACC TGGGCGGCAAGCCGACCTGGCGTGAAGACATCCTCGGTTTCGTACCGGGTGAAGCCCCGCAGAAACGCGTGTGCGTCGGCGGCATCAACGGCGTCTATAG CCTCGGCGATTCGCTCGCCGATGGTTTCGAAGGCGGCGTGCGCGCGGCCAGTGAAGCGGGTTTCGCCCCGGTGGAAGGCACGCTGCCCAAAGCCTTGAGC CGTCTGGAAGAGCCGACGCTGGCGGTGTACCAAGTGCCGCACGACAAACCGACTGCACGGGCACCGAAGCAATTTGTCGACCTGCAAAACGATGTGACCG CCGCCGCCATCGAACTGGCGACCCGCGAAGGTTTCGAGTCGGTCGAGCACGTCAAACGCTACACCGCGCTCGGCTTCGGCACCGACCAGGGCAAGCTGGG CAACGTCAACGGTCTGGCCATTGCTGCGCGCTCGCTGAACGTGACCATCCCGCAGATGGGCACCACCATGTTCCGCCCCAACTACACGCCGGTGACCTTC GGCGCGGTGGCGGGCCGTCACTGTGGGCACATCTTCGAACCGGTGCGCTACACCGCCCTGCAAGCCTGGCACGTCAAGAACGGCGCCGAGTTTGAAGACG TCGGCCAGTGGAAACGCCCTTGGTACTTCCCGCGCAACGGTGAAGACCTGCACGCCGCGGTGAAACGCGAATGCCTGGCCGTGCGCGACAGCGTCGGCCT GTTGGACGCGTCGACCCTCGGCAAGATCGACATCCAGGGCCCGGACGCGCGTGAGTTCCTCAACCGCATCTACAGCAACGCCTGGACCAAGCTCGACGTG GGCAAGGCGCGCTACGGCCTGATGTGCAAAGAAGATGGCATGGTCTTCGACGACGGCGTCACTGCCTGCCTCGCCGACAACCACTTCCTGATGACCACTA CCACCGGCGGCGCCGCCCGCGTGCTGCAGTGGCTGGAAATCTACCAGCAGACCGAATGGCCAGACCTCAAGGTGTACTTCACCTCGGTCACCGACCATTG GGCGACCATGACCCTGTCCGGCCCCAACAGCCGCAAGCTGTTGAGTGAGGTCACCGACATCGACCTGGACAAGGACGGCTTCCCGTTCATGACCTGGAAA GAAGGCCTGGTCGGCGGTGTGCCGGCGCGAGTGTTCCGCATCTCGTTTACCGGTGAGCTGTCGTACGAAGTCAACGTGCAGGCCGACTATGCCATGGGCG TGCTGGAACAGATCGTCGAGGCCGGCAAAAAGTACAACCTGACCCCGTACGGCACCGAAACCATGCACGTGCTGCGGGCCGAGAAGGGCTTCATCATCGT CGGCCAGGACACCGACGGCTCAATGACCCCGGACGACCTGAACATGGGCTGGTGCGTCGGCCGCACCAAGCCGTTCTCGTGGATCGGCTGGCGTGGGATG AACCGTGAAGACTGCGTGCGTGAAGAGCGTAAGCAACTGGTGGGCTTGAAGCCGATCGACCCAACCGTGTGGCTGCCGGAAGGCGCGCAGTTGGTGTTCG ATCCGAAGCAGACGATCCCGATGAAGATGGTCGGCCACGTCACCTCGAGCTATGCCCACAACTCCCTCGGCTATTCGTTTGCGATGGCGGTGGTGAAGGG CGGCTTGAAGCGCATCGGTGAGCGGGTGTTCTCGCCGCAAGCGGATGGCAGCGTGATCGAGGCGGAGATTGTGTCCTCGGTGTTCTTTGATCCGAAAGGT GAACGGCAGAACATTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAGACCGAGTCGCCTGCATCGGGGGCAAGCCCCCTCCCACATGTTGAAATGCATTCCCCTGTGGGAGGGGGCTTGCCCCCGATGAGGCCAGAACAGTCAC CATAGAATTCAGGACAGGTGCTCTATGACAGCAGCCAACGTATACCAACAACGCCCCACCACCGGCGCCAAAGCCGAGTCGTCGCTGCACCATGCCGACC TCGCCAGCCTGATCGGCAAGGGCCGCAAGAACGCCGGCGTGACCGTGCGTGAAAAGAAACTCCTTGGCCACCTGACCCTTCGTGGCGATGGCCACGATGC AGCCTTCGCCGCCGGCGTACACAAAGCCCTCGGTATTGAGCTTCCAGGCGCCCTGCAGGTCATCCTCAAAGGCGAAACCAGCTTGCAATGGCTCGGCCCG GATGAGTGGCTGCTGGTCGTGCCAAGCGGTGAAGAATTCGCCGCCGAGCAAAACCTGCGTGCCGCCTTGGGCGACCTGCATATCCAGATCGTCAACGTCA
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| Amino Acid Sequence |
>sarcosine oxidase subunit alpha
MSQTNRLSNGGRIDRNKVLTFTFNGQSYKGFEGDTLAAALLANGVDIIGRSFKYSRPRGIFAAGAEEPNAVLQIGATEATQIPNVRATQQALYQGLVATS TNGWPNVNNDVMGILGKVGGKLMPPGFYYKTFMYPQSFWMTYEKYIRKAAGLGRSPTENDPDTYDNFNRHCDVLVVGAGPAGLAAALAAARSGARVILAD EQEEFGGSLLDSRESLDGKPAAEWVASVIAELKALPDVVLLPRATVNGYHDHNFLTIHERLTDHLGDRAPIGVVRQRIHRVRAKRVVLATGACERPLVYG NNDVPGNMLAGAVSTYVRRYGVAPGKKLVLSTNNDHAYRVALDWLDAGLQVVAVADVRHNPRGALVEEARAKGIRILTGSAVIEARGSKHVTAARVAAID VKAHKVTSPGEWLECDLVASSGGYSPVVHLASHLGGKPTWREDILGFVPGEAPQKRVCVGGINGVYSLGDSLADGFEGGVRAASEAGFAPVEGTLPKALS RLEEPTLAVYQVPHDKPTARAPKQFVDLQNDVTAAAIELATREGFESVEHVKRYTALGFGTDQGKLGNVNGLAIAARSLNVTIPQMGTTMFRPNYTPVTF GAVAGRHCGHIFEPVRYTALQAWHVKNGAEFEDVGQWKRPWYFPRNGEDLHAAVKRECLAVRDSVGLLDASTLGKIDIQGPDAREFLNRIYSNAWTKLDV GKARYGLMCKEDGMVFDDGVTACLADNHFLMTTTTGGAARVLQWLEIYQQTEWPDLKVYFTSVTDHWATMTLSGPNSRKLLSEVTDIDLDKDGFPFMTWK EGLVGGVPARVFRISFTGELSYEVNVQADYAMGVLEQIVEAGKKYNLTPYGTETMHVLRAEKGFIIVGQDTDGSMTPDDLNMGWCVGRTKPFSWIGWRGM NREDCVREERKQLVGLKPIDPTVWLPEGAQLVFDPKQTIPMKMVGHVTSSYAHNSLGYSFAMAVVKGGLKRIGERVFSPQADGSVIEAEIVSSVFFDPKG ERQNI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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