Pseudomonas fluorescens SBW25, PFLU5628
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CACAGTGAGCTTGTTGGCGCGTTGTATCGCGACCATCGTGGCTGGCTGTTGGCGTGGCTGCGACGCAATGTGGCCTGTCCTAGCCGCGCCGAGGACCTGA GCCAGGACACCTTCATGCGCCTGCTTGGCCGTGACGAGTTACGCGAACCCCGCGAGCCCCGCGCGTTTCTCATCGCGATCGCCAAGGGCCTGCTGTTCGA TTATTTCCGTCGCGCTGCCCTGGAACAGGCCTACCTCACCGAACTGATGCTGATCCCCGAAAGCGAACACCCTTCGCCGGAAGCCCAGCAACTGATCCTC GAAGACCTCAAGGCCATCGACCGCCTGCTCGGCAAATTGTCGAGCAAGGCCCGCGCAGCCTTTCTCTACAACCGCCTCGACGGCATGGGCCACGCAGACA TCGCCCAACGCCTCGGCGTGTCAGTACCGCGCGTGCGCCAATACCTGGCTCAGGGCATTCGCCAGTGCTACATCGCGCTGTATGGCGAGCCGCAGTGACC
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| DNA Sequence for Gene |
>PFLU5628
GTGATCAGTTCCAAGCCGGTCTCGGCCCGTGTGCTGGATGCGGCGATTGCCTGGCAACTGTCCCTCGATTCGGGCGACGGCAGCGTGGTGGAGCGCGAAG AATTCGACAAATGGCTGGCCAGCGATGAAGAGCACGCCCGCGCCTGGCGGCAGTTGGGCATGCTCGACCAGCGTTTCAGTGCGGCCTCGGGCCCGGCGCG GGCGGCGTTGTTGCAATCGCGTGAGGGCATTCGCCAACGTGTGCGCAAGTTGGGCAGTGGTCTGGCGAGTATCGCCGTGGTAATTGGCCTGGCGTTGTTT GCCGGTGAGCGTTATGTGCCGATCCACTATTGGCTGGCTGACCAACGTACCGCCACCGGCGAGCAGCGCACGCTGAAACTGGCGGACGGCACGCTGATCA ACCTCAATACCCACAGCGCTATCGACGTGCGTTTTGATGAAAAACGCCGACTGATCGTGTTGCAGGAAGGCGAAATCCTGGTCGAGACCGGCCACCACGA CGCACGCCCGTTCTATGTGCAAACTCGCGACGGCAGCCTGCGGGCACTGGGCACGCGGTTTATCGTCAAGCGCGAAGACGACGCCACGCGCTTGAGCGTG CTGCAGTCGGCGGTGGCCGCTCAGCCCGAAGCCCTGCACCGGGAACAGATTTTCAAGGAAGGCCAGCAAGTGCTGATGCGCAGCGACGGTCTCGGCCCTA CGCTTGCCGTCACCCCGGCCACCGACGCCTGGACACGCGGCATGCTGGTTGTGGACAACGCTCGCCTGGGCGATGTGGTCGAGGAGCTGAGCCGCTACCG CACCGGTTACCTGGGCGTGGATAAAAACGTTGCCGACCTGCGCATCACCGGCAGCTTCCCGCTGCACGACACCACCTTGGCGCTCAACGCGCTGCTACCG ACGCTGCCGGTGCAGATCGAGCAGCACACACCGTGGTGGGTGACGGTTACCCGTAAGCCTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTTTGGCGGTGCCTTGGCTATCGCTTGCTCGCGACGATGCCCTGCCAACCCCCTCAAATACCCCAGACAAAAAATATTTCCATCCCCCCCTATCACTTTT CACTTCTCGTTCGGCACCTAGGCAATTGAGAAATATTTCCATTCAGGAGCCGCCGTATGTCCCGCACGCTAGACACCTTGTTGCGCCCCAGCCTGTTAGC CGTGGCCATTGCCCTCAGCGCCCCGCTGGCCAGCACCGCGCTGGTCGCCGCCGAACAGGCTTCCAGCGTGCGCGCCTACAACCTGCCGGCGGCGCCACTG GCCAGCACCCTGAACCAGATCGCCAGCCAGGGCGGCCTCGCGCTGACCCTCAGCCCGGCGCTGGCGTCGGGCAAGACCTCGGCGCCGGTCCAGGGCCAGT TCGATGCGCCGGGAGCGCTGCGTGAGGCGCTGCGTGGGACGGGTTTGCAGTTGGAGCAAAGCAGTGCGGAGACTTATACCTTGGTGGCTGTGCCGGAGGG
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| Amino Acid Sequence |
>putative anti sigma factor
MISSKPVSARVLDAAIAWQLSLDSGDGSVVEREEFDKWLASDEEHARAWRQLGMLDQRFSAASGPARAALLQSREGIRQRVRKLGSGLASIAVVIGLALF AGERYVPIHYWLADQRTATGEQRTLKLADGTLINLNTHSAIDVRFDEKRRLIVLQEGEILVETGHHDARPFYVQTRDGSLRALGTRFIVKREDDATRLSV LQSAVAAQPEALHREQIFKEGQQVLMRSDGLGPTLAVTPATDAWTRGMLVVDNARLGDVVEELSRYRTGYLGVDKNVADLRITGSFPLHDTTLALNALLP TLPVQIEQHTPWWVTVTRKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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