Pseudomonas fluorescens SBW25, PFLU5512 (rplF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01365_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0019843 rRNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01365_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01365_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01365_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR11655 60S/50S RIBOSOMAL PROTEIN L6/L9 IPR000702 Large ribosomal subunit protein uL6-like 1 177 2.3E-49
Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. IPR019906 Large ribosomal subunit protein uL6, bacterial-type 1 176 38.470631
Gene3D G3DSA:3.90.930.12 - IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 1 82 3.3E-26
FunFam G3DSA:3.90.930.12:FF:000001 50S ribosomal protein L6 - - 83 177 6.2E-45
SUPERFAMILY SSF56053 Ribosomal protein L6 IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 1 82 1.06E-23
PIRSF PIRSF002162 RPL6p_RPL6a_RPL9e_RPL9o IPR000702 Large ribosomal subunit protein uL6-like 1 177 3.2E-47
FunFam G3DSA:3.90.930.12:FF:000002 50S ribosomal protein L6 - - 1 82 7.9E-29
Gene3D G3DSA:3.90.930.12 - IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 83 177 2.1E-40
NCBIfam TIGR03654 JCVI: 50S ribosomal protein L6 IPR019906 Large ribosomal subunit protein uL6, bacterial-type 2 176 6.7E-77
Pfam PF00347 Ribosomal protein L6 IPR020040 Large ribosomal subunit protein uL6, alpha-beta domain 12 82 1.1E-17
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Large ribosomal subunit protein uL6, bacterial-type 99 115 5.4E-34
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Large ribosomal subunit protein uL6, bacterial-type 141 162 5.4E-34
SUPERFAMILY SSF56053 Ribosomal protein L6 IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 83 177 6.62E-37
Pfam PF00347 Ribosomal protein L6 IPR020040 Large ribosomal subunit protein uL6, alpha-beta domain 90 164 7.7E-20
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Large ribosomal subunit protein uL6, bacterial-type 71 96 5.4E-34

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.