Pseudomonas fluorescens SBW25, PFLU5438
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003824 | catalytic activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF02441
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG (InterPro) | 00351 | DDT degradation | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00362 | Benzoate degradation | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00360 | Phenylalanine metabolism | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00900 | Terpenoid backbone biosynthesis | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00625 | Chloroalkane and chloroalkene degradation | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00380 | Tryptophan metabolism | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00330 | Arginine and proline metabolism | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00620 | Pyruvate metabolism | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00622 | Xylene degradation | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00621 | Dioxin degradation | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00130 | Ubiquinone and other terpenoid-quinone biosynthesis | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00350 | Tyrosine metabolism | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00624 | Polycyclic aromatic hydrocarbon degradation | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00626 | Naphthalene degradation | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00230 | Purine metabolism | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00940 | Phenylpropanoid biosynthesis | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00053 | Ascorbate and aldarate metabolism | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52507 | Homo-oligomeric flavin-containing Cys decarboxylases, HFCD | IPR036551 | Flavin prenyltransferase-like | 6 | 202 | 1.7E-57 |
| Gene3D | G3DSA:3.40.50.1950 | - | IPR036551 | Flavin prenyltransferase-like | 1 | 209 | 4.1E-79 |
| PANTHER | PTHR43374 | FLAVIN PRENYLTRANSFERASE | IPR004507 | Flavin prenyltransferase UbiX-like | 5 | 165 | 4.3E-18 |
| NCBIfam | TIGR00421 | JCVI: UbiX family flavin prenyltransferase | IPR004507 | Flavin prenyltransferase UbiX-like | 7 | 200 | 1.6E-58 |
| Hamap | MF_01984 | Flavin prenyltransferase UbiX [ubiX]. | IPR004507 | Flavin prenyltransferase UbiX-like | 5 | 202 | 35.397713 |
| Pfam | PF02441 | Flavoprotein | IPR003382 | Flavoprotein | 6 | 181 | 4.3E-25 |
| FunFam | G3DSA:3.40.50.1950:FF:000001 | Flavin prenyltransferase UbiX | - | - | 5 | 203 | 6.0E-79 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.