Pseudomonas fluorescens SBW25, PFLU5420

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0042834	peptidoglycan binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF110997	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016829	lyase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_02071	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PANTHER	PTHR34183	-	-	-	12	325	1.6E-75
Hamap	MF_02071	Endolytic peptidoglycan transglycosylase RlpA [rlpA].	IPR034718	Endolytic peptidoglycan transglycosylase RlpA	3	195	24.858273
Gene3D	G3DSA:2.40.40.10	-	IPR036908	RlpA-like domain superfamily	102	196	2.8E-37
FunFam	G3DSA:2.40.40.10:FF:000003	Endolytic peptidoglycan transglycosylase RlpA	-	-	102	195	8.0E-46
CDD	cd22268	DPBB_RlpA-like	-	-	103	193	2.52664E-54
SUPERFAMILY	SSF50685	Barwin-like endoglucanases	IPR036908	RlpA-like domain superfamily	99	192	9.73E-11
NCBIfam	TIGR00413	JCVI: septal ring lytic transglycosylase RlpA family protein	IPR012997	Rare lipoprotein A	105	199	1.1E-42
SUPERFAMILY	SSF110997	Sporulation related repeat	IPR036680	Sporulation-like domain superfamily	258	329	3.14E-11
Pfam	PF03330	Lytic transglycolase	IPR009009	RlpA-like protein, double-psi beta-barrel domain	103	192	7.9E-25
Gene3D	G3DSA:3.30.70.1070	Sporulation related repeat	IPR036680	Sporulation-like domain superfamily	254	330	1.6E-10
Pfam	PF05036	SPOR domain	IPR007730	Sporulation-like domain	259	331	9.5E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.