Pseudomonas fluorescens SBW25, PFLU5249
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCTTTGGGTGGTTTCCTGAAAAAAGGATTGCCTCATGGCTCTCGACGTTCAAGAAAAAGCACAAATCGTAGCTGACTATCAGCAAGCTGTTGGTGACA CTGGTTCGCCAGAAGTGCAAGTTGCACTGCTGACCCACAACATCAACAAGCTGCAAGGTCACTTCAAGGCCAACGGTAAAGATCACCACTCCCGTCGTGG TCTGATCCGCATGGTAAACCAGCGCCGTAAGCTGCTGGACTACCTGAAAGGCAAGGATCTGGGTCGTTATCAGACTCTGATCGGTCGCCTGGGTCTGCGT CGCTAATCAGCGATTGCGCTAGAGGTTGGTTGTCTGCCGTGTGTCAGTGGGATTCCCGCTGGCCCATGGCAGGCTCCCAGCCTCAAGTTTTATCTGGATA CACGTTTTACCCTGGACAAGCGGCGGGCCGATTCCCGACATTGCCCAAGAATTTCGCAAGAAGACAAGTTCCCCAAGAGCCACAAAGAAGGTAGGACACC
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| DNA Sequence for Gene |
>PFLU5249
GTGAACCCGGTTATCAAAAAATTCCAGTTCGGTCAGTCGACCGTTACCCTCGAGACAGGCCGTATCGCCCGTCAAGCCTCCGGCGCAGTGCTGGTTACCG TTGACGACGACGTCACCGTATTGGTGACCGTTGTTGGCGCCAAGACCGCTGACCCGAGCAAAGGCTTCTTCCCTCTTTCCGTTCACTACCAGGAAAAGAC TTACGCTGCCGGTAAGATCCCTGGCGGTTTCTTCAAGCGCGAAGGCCGTCCTTCCGAGAAAGAAACCCTGACTTCCCGACTGATCGACCGTCCGATCCGT CCGCTGTTCCCAGAAGGCTTCATGAACGAAGTGCAGGTTGTCTGCACCGTCGTTTCCACCAGCAAGAAGACCGATCCGGACATCGCTGCGATGATCGGTA CCTCGGCGGCCCTGGCTATTTCCGGCATTCCTTTCGATGGCCCGATCGGCGCTGCCCGCGTCGCCTTCCACGAAAGCACCGGCTACCTGCTGAACCCGAC TTACGAGCAGCAGAAAGCTTCGAGCCTGGACATGGTCGTTGCCGGTACTTCGGAAGCCGTGTTGATGGTTGAATCGGAAGCCAAAGAGCTGACCGAAGAC CAGATGCTGGGCGCGGTACTGTTTGCTCACGACGAGTTCCAAGTGGTGATCAACGCCGTCAAAGAACTGGCTGCCGAAGCGGCCAAGCCAACCTGGACCT GGGCTCCACAGCCAGAAGCCACCGCACTGCTGGGCGCTATCCGCTCCGAGTTCGGCGCTGCTATCTCCGACGCCTACACCATCACTGTCAAGGCCGACCG TTACGCTCGCCTGGGTGAGCTGAAGGACCAAGTCGTTGCCAAGCTGTCCGGCGAAGAAGGCCAGCCTTCTTCCAGCGAAGTCAAAGCAGCCTTCGGTGAA ATCGAATACCGCACCGTTCGCGAAAACATCGTTAACGGCAAGCCACGTATCGACGGCCGCGACACCCGCACCGTGCGCCCGCTGAACATCGAAGTCGGCG TTCTGCCGAAGACTCACGGTTCGGCCCTGTTCACCCGTGGTGAAACCCAGGCACTGGTTGTTGCGACCTTGGGTACTGCCCGCGACGCACAGCTGCTGGA CACCCTGGAAGGCGAGAAAAAAGACCCCTTCATGCTGCACTACAACTTCCCTCCGTTCTCGGTGGGCGAGTGTGGTCGCATGGGCGGTGCTGGTCGTCGC GAAATCGGTCACGGCCGCCTGGCCCGTCGTTCGATTTCGGCCATGCTGCCAGCCGCCGACGTGTTCCCGTACACCATCCGTGTCGTATCGGAAATCACTG AGTCGAACGGTTCCAGCTCCATGGCTTCCGTTTGCGGTGCTTCCCTGGCACTGATGGACGCCGGTGTGCCGATGAAGGCGCCGGTTGCCGGTATCGCCAT GGGTCTGGTTAAAGAAGGCCAGAAGTTCGCCATCCTGACCGACATCCTGGGCGACGAAGACCACCTGGGTGACATGGACTTCAAAGTAGCCGGTACCGCC AAAGGTGTGACCGCGCTGCAGATGGACATCAAGATCAAAGGCATCACCGAAGAAATCATGGAAATCGCTCTGGGCCAAGCCCTGGAAGCGCGCCTGAACA TCCTCGGTCAGATGAACCAGATCATTGGTCAGTCGCGTACCGAGCTGTCGGAAAATGCTCCGACCATGATCGCGATGAAAATCGACACCGACAAAATCCG TGATGTTATCGGTAAAGGCGGCGCGACCATTCGTGCGATCTGCGAAGAAACCAAGGCTTCGATCGACATCGAAGATGACGGTTCGATCAAGATCTTCGGC GAAACCAAGGAAGCTGCAGAAGCCGCGCGTCAGCGCGTTCTGGGCATCACTGCTGAAGCCGAGATCGGCAAGATCTACGTTGGTAAGGTTGAGCGCATCG TCGACTTCGGCGCATTCGTCAACATCCTGCCAGGCAAAGACGGTTTGGTTCACATCTCCATGCTGAGCGACGCTCGCGTTGAGAAAGTGACCGACATTCT GAAAGAAGGCCAGGAAGTGGAAGTGCTGGTTCTGGACGTGGACAACCGCGGCCGTATCAAGCTGTCCATCAAGGACGTAGCAGCAGCGAAGGCTTCGGGC GTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCACCCCGGGCTTTACGCTGAAAAAAGGACTCTTCGGAGTCCTTTTTTTATGCCCGTGAGAAAATGCCTAATAATCAGGCGCTTACTAAACTCAAAAAAA GCCGCAACTTGCATGCAGGGGCGGACTGTTTCATGCAAGTTGCACGATTTCGAAAATTACCTGTTTTTATAAGTGATTGTTTTATAACGATTTAATTCCA GATCAAGACTTGGCACACTGCCTGCAATAACCCTGTTAACGCTGCAGCATCAAGGTTCACACACTGCAGACTTTTAATAAAACAGGAGTTACTCGTATGA AGAAGTTCGCTCTCGCTACTGCAACTGCTACCGCTCTGACCCTGGCTATGGCTAACGTAGCCTTCGCACAGAATTCCCAGGCGCCAATGACCCTGGCAGC CGGTGAAGTCACCAAGGCAAAAGAATCGACTTCTGACACTTGGATCACCACCAAAGTTAAAGCTGATCTGCTGACCGAAAAAGGCATTCCGGGTTCGGAC
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| Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIR PLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVVAGTSEAVLMVESEAKELTED QMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEATALLGAIRSEFGAAISDAYTITVKADRYARLGELKDQVVAKLSGEEGQPSSSEVKAAFGE IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRR EIGHGRLARRSISAMLPAADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGQKFAILTDILGDEDHLGDMDFKVAGTA KGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASG V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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