Pseudomonas fluorescens SBW25, PFLU4890

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006865	amino acid transport	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR00905	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006527	arginine catabolic process	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR03810	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:PF13520	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0022857	transmembrane transporter activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF13520	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:1903826	arginine transmembrane transport	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR03810	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0043858	arginine:ornithine antiporter activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR03810	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0055085	transmembrane transport	ISM Inferred from Sequence Model Term mapped from: InterPro:PF13520	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0005886	plasma membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR03810	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PIRSF	PIRSF006060	AA_transporter	-	-	9	482	2.8E-50
PANTHER	PTHR42770	AMINO ACID TRANSPORTER-RELATED	-	-	17	450	1.0E-90
NCBIfam	TIGR00905	JCVI: basic amino acid/polyamine antiporter	IPR004754	Amino acid antiporter	13	486	0.0
Gene3D	G3DSA:1.20.1740.10	Amino acid/polyamine transporter I	-	-	17	475	1.1E-61
Pfam	PF13520	Amino acid permease	IPR002293	Amino acid/polyamine transporter I	23	426	2.4E-73
NCBIfam	TIGR03810	JCVI: arginine-ornithine antiporter	IPR022461	Arginine/ornithine antiporter	18	485	0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.