Pseudomonas fluorescens SBW25, PFLU4858
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTGTTCCACAACGTCGACCTGCCCAGAATCGTGGAACCCGCGGAAGGGAAACAGCCACCCATCCAGTGAGAGGAATAACCCTCCCACACGCTTCTGGAGA ATCAATGATGGAAGAAATCGGAAAAGCAGGCGGACAGATGGCGATGCAACTCATCACCGGACTTATGAAAGGCCTCGCCGGCGGGGCGGGTGGCGGTGGC GGTGATGGCGCTGCTGCCAGCCCTCCCAGCAAACCAGGCGAGGACATGATGCCGCCAGCGCCGCCAAAGATCGAGATTTCAGCCTATCAATAACAGCGGC CACGGTAGGAAAGGCATTTGCCTGACCCCACGTACGCCGAGTCCCCCAGACGGCGGAGCAAATCCGCCGTTTTTTCTGGTTTTTTCTCCCTCCCCACCGC CAAGACGTCTCCAGCCCTAATGTTCCTTTGACTGGCCTCACGGGATTGCCAATACTCATGGCATATTGAAGGCCACCCGCATGAGACAAGGAATGCCCCT
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| DNA Sequence for Gene |
>PFLU4858
TTGAAGCTGGAACTCAAGAACAGCTTGTCGGTGAAGTTGCTACGGGTTGTGCTGCTGTCGGCATTGATCGTAGGCGTTGCGCTGAGCGTGGCGCAGATCG TTTTCGATGCTTACAAGACGCGCCAGGCCGTGGCCAGCGATGCCCAGCGCATCCTCGACATGTTTCGCGACCCTTCGACCCAGGCCGTCTACAGCCTGGA CCGCGAGATGGGCATGCAAGTCATTGAGGGGCTGTTCCAGGATGATGCCGTGCGTATCGCCTCCATCGGCCATCCCAACGAAACCATGCTGGCTGAGAAA AGCCGCGCATTGCAGCAAGCCCCCAGCCGCTGGTTGACCGACCTGATTCTTGGCCGGGAACGCACCTTTACCACGCCTCTGGTGGGCAAAGGCCCTTACA GTGAGTATTACGGTGACCTGAGTATCACGCTCGACACTGCCACTTATGGCCAGGGTTTTATTGTCAACTCGGTGATCATCTTTATTTCCGGCGTGCTGCG CGCCCTGGCCCTGGGCCTGGTGCTGTACCTGGTCTATCACTGGCTGCTGACCAAGCCGTTGTCGCGGATTATCGAGCACCTGACCTCGATCAACCCGGAC CGCCCCAGCGAACACAAGATCCCACAGCTCAAGGGGCACGAGCGCAACGAGTTGGGGCTGTGGATCAATACCGCCAACCAGTTGCTCGAATCCATCGAAC GTAATACCCACTTGCGCCATGAAGCCGAAAGCAGCCTGCTGCGCATGGCTCAGTATGATTTCCTGACTGGCCTGCCGAACCGCCAGAAACTGCAGGAGCA ACTGGACAAGATCCTCACCGACGCCGGACGCCGGCAACGGCGCGTGGCGGTGCTGTGCGTGGGGCTGGATGATTTCAAAAGCGTCAACGAACAGTTTACC TACCAGGCCGGTGACAAACTGCTGCTGGCCCTGGCCGACCGTCTGCGCGCCCACAGCGGCCGCCTCGGCGCCCTGGCCCGGCTGGGTGGCGACCAGTTCG CCCTGGTACAGGCCGATATCGACCAGCCTTACGAGGCCGCCGAGCTGGCACAGAGCATCCTCGACGACCTGGAAGCGGAGTTCGCCCTCGACCACGAGGG TATCCGCCTACGCGCCACCATCGGCATCACCTTGTTTCCGGAAGACGGCGACAGCACCGAAAAGCTCCTGCAAAAAGCCGAACAGACCATGACCCTGGCC AAGACCCGTTCGCGCAACCGCTATCAGTTCTATATCGCCAGCGTCGACAGCGAAATGCGTCGGCGCCGCGAACTGGAAAAAGACCTGCGGGAGGCCCTGG GCCGCAACCAGTTCCATTTGGTATACCAGCCGCAGATCAGCTACCGCGACAATCGGGTGGTCGGCGTAGAAGCCCTGCTGCGCTGGCAGCACCCGGAGCA CGGCCTGGTACCACCGGACTTGTTCATCCCGCTCGCGGAACAAAACGGCACCATTATTCCCATTGGCGAATGGGTGCTGGACCAGGCCTGCCGACAATTG CGCGAATGGCACGACCTGGGCTTCACCGACCTGCGCATGGCCGTCAACCTGTCCACCGTGCAGTTGCACCACACCGAGCTACCGCGGGTGGTCAACAACC TCATGCAGATCTACCGCCTGCCGCCGCGCAGCCTGGAACTGGAAGTCACTGAGACCGGCCTGATGGAAGACATCAGCACCGCGGCTCAGCACCTGCTGAG CCTCCGCCGCTCGGGCGCGTTGATCGCGATTGATGACTTCGGCACCGGCTATTCATCCCTCAGTTACCTGAAAAGCCTGCCGCTGGACAAAATCAAGATC GACAAGAGCTTCGTCCAAGACCTGTTGGACGATGATGACGATGCCACCATCGTGCGCGCGATTATCCAACTGGGCAAAAGCCTGGGCATGCAGGTCATCG CCGAAGGCGTGGAAACCGCTGAGCAGGAGGCCTACATCATCTCCGAGGGTTGCCATGAAGGTCAGGGCTACCACTACAGCAAACCCTTGCAGGCCCGGGA GTTGGCGGCTTTTCTGAAGCAGTCTGAACGCAATAACGCAGCGATTCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGTGGCAACGTCGCCACAGGGTCAGTCTTCTCGCTTGACTGGAGAGCATGGGGACTTGCCCTAAACACGATACTGAATATTTCCCGCGTATAACCCTTTA CACAAAATGCAAATCTTTCGCATTATGTCGCAGTTTTTGCGCGCCTCCGCGCGCCCCCTCAACAACCGAAGCAGGATGTTCGCCATGATTCGTATGCCCC TGGCCACCGCCAGTCTGCTGGCCATTGCCATTTCTCTCGCCGGTTGCGGCGAAGGTAAAGACAAGCCCGCAGCAAACCAGGCGCCGACCCCGGCCGCCAG CACTACCGCTCCAGCGGCTGCCACGCCTGCCGGCCAGGTCGACGAAGCGGCCGCCAAGGCTGTGGTCGCGCATTACGCTGACATGGTGTTTGCGGTCTAC AGCGATGCCGAGTCCACCGCGAAAACCCTGCAAACTGCAATCGACGCCTTCCTCGCCAAGCCGAACGACGAAACCCTGAAAGCCGCACGCACTGCCTGGA
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| Amino Acid Sequence |
>putative signaling protein
MKLELKNSLSVKLLRVVLLSALIVGVALSVAQIVFDAYKTRQAVASDAQRILDMFRDPSTQAVYSLDREMGMQVIEGLFQDDAVRIASIGHPNETMLAEK SRALQQAPSRWLTDLILGRERTFTTPLVGKGPYSEYYGDLSITLDTATYGQGFIVNSVIIFISGVLRALALGLVLYLVYHWLLTKPLSRIIEHLTSINPD RPSEHKIPQLKGHERNELGLWINTANQLLESIERNTHLRHEAESSLLRMAQYDFLTGLPNRQKLQEQLDKILTDAGRRQRRVAVLCVGLDDFKSVNEQFT YQAGDKLLLALADRLRAHSGRLGALARLGGDQFALVQADIDQPYEAAELAQSILDDLEAEFALDHEGIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KTRSRNRYQFYIASVDSEMRRRRELEKDLREALGRNQFHLVYQPQISYRDNRVVGVEALLRWQHPEHGLVPPDLFIPLAEQNGTIIPIGEWVLDQACRQL REWHDLGFTDLRMAVNLSTVQLHHTELPRVVNNLMQIYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIISEGCHEGQGYHYSKPLQARELAAFLKQSERNNAAIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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