Pseudomonas fluorescens SBW25, PFLU4792

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd11386 MCP_signal - - 307 506 3.15409E-53
CDD cd06225 HAMP - - 218 260 6.12654E-6
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 237 540 2.09E-72
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 213 541 2.1E-91
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 508 1.3E-41
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 280 541 2.8E-77
Gene3D G3DSA:1.10.287.950 - - - 213 540 1.4E-72
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 78 539 8.5E-109
SMART SM00304 HAMP_11 IPR003660 HAMP domain 213 265 2.4E-5
Pfam PF00672 HAMP domain IPR003660 HAMP domain 210 252 5.5E-6
Coils Coil Coil - - 470 490 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.