Pseudomonas fluorescens SBW25, PFLU4488 (cobD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009236 cobalamin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR34308
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR34308
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0048472 threonine-phosphate decarboxylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR34308
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
UniPathway UPA00148 adenosylcobalamin biosynthesis InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion 		0

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03186 CobD/Cbib protein IPR004485 Cobalamin biosynthesis CobD/CbiB 8 282 1.4E-95
Pfam PF17113 Regulatory signalling modulator protein AmpE IPR031347 Protein AmpE 74 223 2.1E-6
NCBIfam TIGR00380 JCVI: adenosylcobinamide-phosphate synthase CbiB IPR004485 Cobalamin biosynthesis CobD/CbiB 6 263 1.3E-56
PANTHER PTHR34308 COBALAMIN BIOSYNTHESIS PROTEIN CBIB IPR004485 Cobalamin biosynthesis CobD/CbiB 3 295 1.6E-99
Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. IPR004485 Cobalamin biosynthesis CobD/CbiB 1 302 108.207115

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.