Pseudomonas fluorescens SBW25, PFLU4423 (fliR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCCGAATTGAAGACGGCGTTCCAAATCGGCTTCATGATCTTTATCCCGTTCCTGATCATCGACCTGGTGGTGGCGAGCGTGCTGATGGCCATGGGTATGA TGATGCTGTCGCCGCTGATCATCTCGTTGCCGTTCAAGATCATGCTGTTTGTGCTGGTGGACGGCTGGGCGCTGATTATCGGCACCCTGGCCAGTAGTTT CGGCGGGGTATAGCGCAATGACTCCCGAAGTCGCCGTCGACCTGTTCCGTGAAGCGCTGTGGCTGACCACCGTGATGGTCGCGGTGCTGGTGGTGCCGAG CCTGTTGGTGGGCCTGCTGGTGGCGATGTTCCAGGCCGCGACCCAGATCAACGAACAGACCTTGAGCTTCCTGCCGCGCCTGCTGGTGATGCTGGTCACC CTGATCGTCGCCGGCCCGTGGCTGGTGCAGACCTTCATGGAATACATCCTGCAGCTGTACGGCAGTATTCCGCAGTTGATCGGCTGACCCGATGCAATCC
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| DNA Sequence for Gene |
>PFLU4423
|fliR
TTGCTGGCATTGACCGACACCCAGATCAGCACTTGGGTGGCGTCCTTCATTTTGCCGCTGTTCCGGATAACGGCCATGTTGATGGCCATGCCGGTGTTCG GCACGACCCTCGTGCCACGGCGGATCCGCTTGTATTTCGCCGTGGCTATTACGGTGGTGCTCGTGCCTGGCCTGCCGCCGATGCCGCCGGTCAATGCGCT GGACCTCAGTGCCCTGATGCTCATCGCCGAGCAGGTCCTGATCGGTACGCTGCTGGGCTTCTCGCTGCAGCTGTTTTTCCAGGCGTTTGTGATCGCCGGG CAAATCATCTCGATCCAGATGGGCATGGGCTTCGCGTCCATGGTCGACCCCACCAACGGCGTGTCGGCGGCGGTGATCGGGCAGTTCCTGACCATGCTGG TGACCTTGCTGTTCCTGGCGATGAACGGCCACCTGGTGGCGTTCGAGGTGCTGACCGAAAGCTTCACCACCTTGCCGGTGGGCTCGGGGCTGGTGGTCAA CCATTTCTGGGAAGTGGTGGGGCGGCTTGGCTGGGTGTTGGGTGCCTCGCTGTTGCTGGTGCTGCCGGCCATTACTGCGTTGCTGGTGGTCAATATTGCG TTTGGCGTAATGACCCGTGCGGCGCCGCAACTGAACATCTTTTCGATCGGTTTCCCGTTGACCCTGGTATTGGGCATGGGGATTTTCTGGGTCGGCCTGG CTGACATTCTCAATCAGTATCAACCGCTGGCGACCGACGCCTTGCAGTTCTTACGTGACCTGGCACGGGCGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCATGGCCGAGAGCGAGAGTGGTCAGGACAAAACAGAAGACCCCACGGAGAAACGCAAAAAGGACTCCAGGGAAAAGGGCGAGATTGCGCGCTCCAAAG AGCTCAATACCGTTGCCACCATGATGGCCGGCTCCGGCGCCTTGCTGATCTACGGCGGTGGCCTGGCGCTGGACTTGATGGAGCTGATGAAGCACAACTT CGCCTTGCCTCGTGAAGTGCTGCTCAACCCCGACGCCATGGGCCAGTACCTGCTGCACTCCGGCAAGATCGCGATCCTGGCGGTGCAGCCGATCCTGATC ACCTTGCTGCTGGCCGCGCTGATTGGCCCGGTCGCCTTGGGTGGCTGGCTGTTCGCTGCCGGCAGCATGGCGCCCAAATTCAGCCGCATGAACCCCGGTG CCGGGCTTAAGCGCATGTTTTCCGCCAAGGCCTTGGTGGAGCTGCTCAAGGCCTTGGCCAAGTTCATCCTGATCCTGTTTGTGGCGTTGATGGTGTTGTC
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| Amino Acid Sequence |
>flagellar biosynthesis protein FliR
MLALTDTQISTWVASFILPLFRITAMLMAMPVFGTTLVPRRIRLYFAVAITVVLVPGLPPMPPVNALDLSALMLIAEQVLIGTLLGFSLQLFFQAFVIAG QIISIQMGMGFASMVDPTNGVSAAVIGQFLTMLVTLLFLAMNGHLVAFEVLTESFTTLPVGSGLVVNHFWEVVGRLGWVLGASLLLVLPAITALLVVNIA FGVMTRAAPQLNIFSIGFPLTLVLGMGIFWVGLADILNQYQPLATDALQFLRDLARAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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