Pseudomonas fluorescens SBW25, PFLU4308
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCGCGAGCGCAGTGACCAAGCCTGCTGGCAGGCACTGGAAATTGCGCAGTTGGAGGCTACCGTCAAGGCATTGCCGATGGGCCTGGATAGTGTGGTGG GGCGTTCCGGGGTGCGGTTTTCCGGCGGGCAGCGTCAGCGCCTGGCGATTGCGCGCATGGTGTTGGCTGAGCCGAAAGTGGTGATCCTCGACGAAGCGAC TTCCGCCCTGGACGCCGCCACCGAGTACAACCTGCACCAGGCGCTCGCGCGCTTCCTCAGCGGGCGTACTACACTGATTATTGCCCACCGCCTGTCGGCG GTTAAGCAGGCCGATCGAGTATTAGTCTTCGACGGCGGTCACATTGCTGAAGATGGTGATCATCAACAGTTGATTGCCGACGGCGGCCTGTACGCCAAAC TCTATGGACACCTGCAACAAGTGCGTTGATTTAGCCTAGGCTGAGCTATCAGAAGCGGATTTTCGCGTGCGTATCCAGCAGTGCATGTGCAAGGGACTTC
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| DNA Sequence for Gene |
>PFLU4308
ATGAAGCAAAAGCGGACTCTCGGAACGCCAAGGCTGTTGGGCATTGTCTGGCCCTTTATAGCCGTCGTACTGTTCCAGGCATTGTTAGGCTGCGTCAGTC TTTACGTGCTTTCGGCAGTACGTGGCTATGTGGCCGGCGAAAGCCTGTGGTCCAAGGGCCAGAAAGACGCCATCTATTACCTGACGCTGTACGCCGATAA CCGCGACGAAACCACTTACCTCAAATACCAGCAGGCCATTGCCGTGCCCCAGGGTGGGCATGAACTGCGCATTGCCTTGGACCGTTCCACGCCCGACCTG AGCGCTGCACGCCTGGGCATTCTCAAAGGCGGCAACCACCCGGATGACGTTTCCAGCCTGATCTGGTTGTACCTCAATTTTCGCCATTTCAGCTACCTGG AAAAAGCCATCGAGCTGTGGACCGTCGGCGATGGCTACCTGGTGCAATTGGATGAACTGGCGCGTGAGATGCACAGCTCGATCACCCGCGACCAGGTCAG CGCCAACGATGTGCAGCAATGGAAGGCGCATATCATCGCCATCAACGAAGGCGTGACGCCCGCTGCCAAGGCCTTTAGTGATGCGTTGGGCGAAGGCTCG CGGATGATCCTGGGGTTGCTGCTGATCACCAACCTGGCCACGGCGCTCGGCCTGATTGTGCTGGCGCTGTTGCGTACGCATAAGTTACTGGCTCAGCGCC ACGCCTTTGCCGATGCCCTGCAACAGGAGAAAGAGCGGGCGCAGATCACCCTGGAGTCGATTGGCGATGGGGTGATCACGACCGACGTCGACGGCGCCAT CAGCTATATGAACCCGGCGGCCGAGGCGCTGACCCACTGGAATTCGGCCCAGGCGCAAGGATTACCCCTGGCAGCGCTGTTCAACTTGCTGGATGACAAT GCCCAGCCCGACGGCTTTACCCTGATCGAACATATCGTTAAGGGCCAATTGAGCGGCGGCAGCGAGCATTCGAAAACCATCCAACGCCTGGATGGCAGTA CGGTGTCGGTGACCCTGGTGGGCGCGCCGATCCGCAGCGGGGGTAAAGTCACCGGGGCGGTGCTGGTGTTGCATGATATGACCCAGGAGCGTCAATACAT TGCCAACCTGTCCTGGCAGGCGACTCACGACGCCCTGACCGGCCTGGCCAACCGTCGTGAATTCGAGTTCCGCCTGGAACAGGTGCTGCACCCTGCCGCT CAGCAGTACGGCGGGCGACATGCCTTGATGTTTCTTGACCTGGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCGGCGGGTGATGAGCTGCTGC GGCATATCTGCGCGCTGCTGCAATCGGACCTGCGCGAAGGCGACACCCTGGCGCGCCTGGGCGGGGATGAATTCGGCATCCTGCTGGAGAATTGCCCGGC GGCGGTGGCGGAGAAAATCGCCGAGAGCCTGCGCCATACCGTGCAAAGCCTGCACTTTGTGTGGAAGGGCCGGCCGTTCATGACCACCGTCAGCATCGGC CTGGTGCACTTGGGGCACACCCCGACCACCCTGGAAACCTCACTGCGCGCCGCCGACATGGCGTGCTACATGGCCAAGGAAAAGGGCCGCAACCGTGTGC AGGTGTACCACGCCGACGACTCGGAACTGTCGCTGCGCTTTGGCGAAATGGCCTGGGTGCAGCGTCTGCACATGGCCCTGGAAGAGAACCGGTTCTGCCT GTATGCCCAGGAAATCTCACCCCTGGGGCAGACCGACGGTGGTGATGGGCATATCGAGATCCTGCTGCGCCTGCACGACGAAGCCGGGCGCATCATCTTG CCCGACAGCTTTATCCCGGCCGCCGAGCGCTACGGTCTGATGACATCCCTGGACCGTTGGGTGGTGGAGAATGTGTTCAAGATCATCGCCCGTTGCCTGC ACGAGCGTCCAGGTCGCCCTATGGCCATGTGTGCGATCAATCTGTCAGGCATAACTATTGGTGATGATGACTTTCTCGGATTTTTGCGTGAGAAATTTCA TACTTACGCAATTCCGCCCGGCATGATCTGTTTTGAAATAACCGAAACCAGCGCTATTGCAAACTTGGGCAGTGCGATCCGCTTTATTAATGAACTCAAA GCCTTAGGCTGTCAGTTTTCGTTGGATGACTTTTGTGCCGGAATGTCCTCATTCGCCTATCTCAAACATTTACCTGTAGACTTCCTGAAGATCGATGGAA GTTTCGTAAAGGATATGCTGGACGACCCGATTAACCGCGCGATGGTCGAAGTGATCAACCACATCGGCCACGTCATGGGTAAGCGCACAATTGCAGAGTT TGTCGAGACACCGCAAATCGAACAGGCGTTACTCGAAATTGGTGTGGATTACGCTCAGGGCTACCTGATTGAACGACCGCAATTGTTTACCTTTGATAGC TTGCAGTGTCGACCTGTGCGGCCGCAGCCTCTGTTATTCAAGGCGCCCGGCACATTCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACATTTGCTGGTCTGTACAATCACACTTAAAAAGGAGCCTTAACAGTGATCGACACATTCAACAGAACCGGCCCGCTTATGGAAGCCTCGAGTTACCCC GCCTGGGCTCAGAAACTGATCCTGGACTGTAGCGAGAGCAAGCGTCGAGTTGTCGAACACGAACTGTACCAGCGCATGCGCGATAACACGCTCAGCGCCA AAACCATGCGCCATTACCTGATCGGTGGCTGGCCAGTGGTGGAACAGTTTGCCTTGTACATGGCACAGAACCTCACCAAGACCAAATTTGCCCGCCATCC TGGGGAAGACATGGCGCGCCGCTGGCTGATGCGCAATATTCGCGTGGAACTCAACCACGCCGACTATTGGGTGCACTGGGCCCGTGCCCATGGTGTGAGC CTGGAGGAGTTGCAGGCCCAGAACGTACCGCCGGAGTTGCATGCACTGAGCCATTGGTGCTGGCACACCAGCTCCGCCGATTCGCTGATTGTGGCCATCG
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| Amino Acid Sequence |
>putative signaling-related membrane protein
MKQKRTLGTPRLLGIVWPFIAVVLFQALLGCVSLYVLSAVRGYVAGESLWSKGQKDAIYYLTLYADNRDETTYLKYQQAIAVPQGGHELRIALDRSTPDL SAARLGILKGGNHPDDVSSLIWLYLNFRHFSYLEKAIELWTVGDGYLVQLDELAREMHSSITRDQVSANDVQQWKAHIIAINEGVTPAAKAFSDALGEGS RMILGLLLITNLATALGLIVLALLRTHKLLAQRHAFADALQQEKERAQITLESIGDGVITTDVDGAISYMNPAAEALTHWNSAQAQGLPLAALFNLLDDN AQPDGFTLIEHIVKGQLSGGSEHSKTIQRLDGSTVSVTLVGAPIRSGGKVTGAVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEFRLEQVLHPAA QQYGGRHALMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSDLREGDTLARLGGDEFGILLENCPAAVAEKIAESLRHTVQSLHFVWKGRPFMTTVSIG LVHLGHTPTTLETSLRAADMACYMAKEKGRNRVQVYHADDSELSLRFGEMAWVQRLHMALEENRFCLYAQEISPLGQTDGGDGHIEILLRLHDEAGRIIL PDSFIPAAERYGLMTSLDRWVVENVFKIIARCLHERPGRPMAMCAINLSGITIGDDDFLGFLREKFHTYAIPPGMICFEITETSAIANLGSAIRFINELK ALGCQFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVETPQIEQALLEIGVDYAQGYLIERPQLFTFDS LQCRPVRPQPLLFKAPGTFR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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