Pseudomonas fluorescens SBW25, PFLU3353
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AACGACAGCGGGATACCCAGCTCTAATAAATGGCTGTGTACGCCGCGCACACCCAGGGTGCGCTGGTTGTCGGCGGCGGTGAGCAGGGCGTCGATGACCT TCAGCCGGATCAGGCTGGTGCGCAAGCCAAAACACTTGAGCAAATGGCGGATACGCTGGTTGCCTTGCTGTTCGGGCACTTTGCCGAATGCTTGTGTACC GCTGCCGAAACTGGCCTCGGCAGCCGATGAATGTCCATCCGTGGGCACTTGCGGGTTGTACATGCAAAAACTCCTTTTCAGAGCCTGATCAGGAAAAAAT GAGCGCTCTTAGTTAATAAGACGAACGAGCGAGCGAAATCATGAAGTGAAGGATGTAGAAATTTCGTCGGTATCCGTTTTGTCACATCCGCGCGGCCCCA ACTAACTCTCCCTCCACGCTAAATTATTCCCGCTGGTTTGCGTTCTTACGGTGGGGTTATTGCCCCTTGTGAGGCGGTTAAATCTGACGGTGGAGTCTGC
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| DNA Sequence for Gene |
>PFLU3353
GTGATTATTTCCAATGGGTTGTCCAGGGTGTGTGTGGCCGGGGTATTGCTGGGGTTGAGCCTGGCTGCCACGGCGCGGGAGCAGGTGACGCAAGCGTCGG CGGATATCCGTCGTACCAGTTATGGCGTGCCGCATATCCGCGCCAATGATGAGCGTGGCTTGGGCTTCGGCATTGGCTACGCTTACGCCCAGGACAACCT GTGCCTGCTGGCCAATGAAGTCGTCACGGTGAATGGGCAGCGTGCCCGGTTCTTCGGCCCCGAACAGGCGACCCTGGAAGAGCGCAACAACCTGGCCAGC GATGTGTTCTTCAACTGGCTCAACCCGCCGGATGCGGTCGCCGCGTTCTGGAAAGCGCAGAGCCCGCAGATCCAGCAGCGTATCGAAGGCTATGTGGCCG GCTACAACCGTTACCTGAAAGAGCAGGGCGCTCCGGCACAGTGCCAGGCGGCCTGGGTGCGGCCATTGGTGGCTGAGGACTTGGTCAAATTGACCCGTAG GTTGCTGGTAGAGGGTGGCGTCGGGCAATTCGCCGAAGCCCTGGTCGGCGCGACGCCGCCTCAAGCGACAGCCTCTGTGACGAGCAGCGCCAAGGCCTTT GAGCTCGCGGCTGCCAACCAGCAGCGCTTCGCCTTCGATCGCGGCAGTAACGCGGTGGCGGTGGGGCGTGACCGCTCGTTCAACGGGCGCGGCATGCTAT TGGCGAACCCGCATTTCCCGTGGGTAGGCGGCATGCGTTTTTATCAGATGCACCTGACCATCCCCGGTCAGCTGGATGTGATGGGCGCTGCGTTGCCGGG CCTGCCGGTAATCAATATCGGCTTTAACCAGCATGTGGCGTGGACCCATACGGTGGATACGTCCAAGCACTTCACGCTGTACCGCCTGACCCTGGATCCC AAGGACGCCACGCGCTATATGCTTGATGGTAAATCGGTGCCGCTGGATAAAACCACGGTGAACGTACAGGTCAAGCAAGCGGATGGCAGCCTCAAGGACC AGTCGCACACCGTCTACAGCTCGCCATTCGGCCCGGTGGTGCAATGGCCGGGCAAGCTCGACTGGGACAGCCACTACGCCTTCAGCCTGCGCGACGCCAA CCTGGGCAATGACCGCGTGCTGCAACAGTGGTACGCAATGAACCGCGCCGCCAGCCTCAATGAACTGAAAACCTCGGTGCACACCCTGCAAGGCATCCCG TGGGTCAACACCCTGGCCGCGGATGACCAGGGCCAGAGCCTGTACATGAACCAGTCGGTGGTGCCCAACGTCAGCGCGGCCAAACTGGCGCAGTGCAGCG ACCCGCGTGCCGGCCTGCAACTGATCCTGCTCGACGGTGCACACAGCGCCTGCGCCTGGGACATCGACCCGCGCGCGGCCCAGCCTGGGATCTTCGCGGC CGACCAACTGCCGCAACTGCAACGCACCGACTACGTCCAGCATTCCAACGACTCGGCGTGGCTGGCCAACCCGAAGGCGCCGCTCACGGGCTTCTCCCCG GTAATCAGCCAGGACCACATCGGCCTTGGCCCGCGCGCGCGTTTTGCCCTGCAGCGCCTGCAATCCCTGCAAAAACCGATCAGCGTCACCGACCTGCAAA ACATGGTGATGGACAACGAGGTGTACCTGGCCGGCCAAGTCATGCCCGACCTGCTCGATTTCTGCGCCAAGCACCTCGGCGCCGACGCCAACGTCCTGCA ACCCCTGTGCTCCAGCCTGAAAAACTGGGACCAACGCGCCAACCTCGACAGCGGCATAGGCCTGGTGCACTTCATCAACCTGGTGCAACAGCTGCAGCAA ATCCCCGACGCCTGGCGCGTCGCCTTCGACCCAGCCCAGCCGCTGACCACCCCGCGCGGCCTGGCGATCGACCGCGCACCCGTGGCGAAAGCGCTGCGCG AAGCCATGCTGGCCTCTTCTGCCGACGTCGAAAAACTGGGCCTGACTGCCGACAGCACATGGGGCGATATCCAAGTCTCCGGCCAAACCCCAATCCACGG TGGCCCGCAGGAACTGGGAATCTACAACGCCATGCAAACCGTGCCCCGCGCCGACGGCAAGCGCGAAGTGGTCAGCGGCAGCAGCTACCTGCAAATCGTC ACCTTCGACGACCAGGGCCCGCATGCCCAAGGCGTACTTGCGTTCTCCGAGTCCACGAACCCAGCCTCCGCGCATTCCAACGACCAGACCCAAGCGTTCT CTCAGAAAAAACTCAGCCCGCTGCCGTTCACCGAAGCCCAAATCAAGGCCGACCCGCAGTACCAGCAACTGCGCATCAAGGAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCAGACGCGCAACCCCTTGATGGCATTACGAAATATTTTTGAAATCAAGGGGTTGCACGCGTTGGTAAATACGTACATAATGGCGCCCATCGAACGCAA CGAAGCATTAAAAACTTCAATGTATTCAATGAGTTAGAGTAGAGGCAGGGTTATACAGCCCACTCAAGTTTTTATACGGTGAGTGCCAGCAGTTGGGGCA TTGATCGTTTGAGGCCGAGTAGCAAAATGGTTATGCAGCGGATTGCAAATCCGCCTACGCCGGTTCGATTCCGACCTCGGCCTCCACTCTTAAAGCCCCG TAGATTAACGTCTACGGGGTTTTTTATTGTCTGCGATTTGGTCATCGCTTCCGCAATTTTTCGGATCGCTTCCGCATCCCTACCTTTTTTCGGGAAATTT AAGACGCCGTTATCGGTATGCCTCTCCCCGATTGGGCGTGGGATTGTGCTCGAGGCTAAAAAGCCTCAGCGTCTACTAACGGCCAGAAGCGATCATTCCG
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| Amino Acid Sequence |
>putative amidase
MIISNGLSRVCVAGVLLGLSLAATAREQVTQASADIRRTSYGVPHIRANDERGLGFGIGYAYAQDNLCLLANEVVTVNGQRARFFGPEQATLEERNNLAS DVFFNWLNPPDAVAAFWKAQSPQIQQRIEGYVAGYNRYLKEQGAPAQCQAAWVRPLVAEDLVKLTRRLLVEGGVGQFAEALVGATPPQATASVTSSAKAF ELAAANQQRFAFDRGSNAVAVGRDRSFNGRGMLLANPHFPWVGGMRFYQMHLTIPGQLDVMGAALPGLPVINIGFNQHVAWTHTVDTSKHFTLYRLTLDP KDATRYMLDGKSVPLDKTTVNVQVKQADGSLKDQSHTVYSSPFGPVVQWPGKLDWDSHYAFSLRDANLGNDRVLQQWYAMNRAASLNELKTSVHTLQGIP WVNTLAADDQGQSLYMNQSVVPNVSAAKLAQCSDPRAGLQLILLDGAHSACAWDIDPRAAQPGIFAADQLPQLQRTDYVQHSNDSAWLANPKAPLTGFSP VISQDHIGLGPRARFALQRLQSLQKPISVTDLQNMVMDNEVYLAGQVMPDLLDFCAKHLGADANVLQPLCSSLKNWDQRANLDSGIGLVHFINLVQQLQQ IPDAWRVAFDPAQPLTTPRGLAIDRAPVAKALREAMLASSADVEKLGLTADSTWGDIQVSGQTPIHGGPQELGIYNAMQTVPRADGKREVVSGSSYLQIV TFDDQGPHAQGVLAFSESTNPASAHSNDQTQAFSQKKLSPLPFTEAQIKADPQYQQLRIKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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