Pseudomonas fluorescens SBW25, PFLU3161
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TATCGCCCACCGCCAAGTCATCCACGCCATCGCCTAAAGCGACCACAACCCCGGCCATCTCATGGCCAAGGCCGGACGGCAAGCGTGCATGGGAAGACGC CAGGTTCTGGCGCCACAGAATGTCATACCAGCTAATGCCAATCGCTTCGACACGCACCTGCACTTCGCCCGGTGCGGGCTGCGCGGCTGCATGCTCTTCG CATTTGAGCACCTCGGCCGGACCAAACTTGTGAAAACGGATCGTGCGGGACATCGCAAACCTCGTCAAAGTAACCTCTAATGCCATGAACTCTATCTGGG CTTTCCGGGTAAGACCACCGGTCGCCATTAATAGTCGACATGCTTGTCATTGATTCCGCAACTGAGGAATAGACCTCAGCTCTTGTAAGAAAACTCAATT TTCTTGTGCAGAGTAACAGCCTTTGCCCGTAAGATTCATGCCGGTCATTCTTCCTATACGGCCGCTCTCGTCAAGTTTGCTGACTCTTCCAGGACACAAG
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| DNA Sequence for Gene |
>PFLU3161
ATGAACCGTAACGACCTGCGTCGTGTCGACCTTAACCTCTTGATCGTATTCGAAACCTTGATGCACGAGCGCAGTGTGACCCGTGCTGCCGAGAAGTTGT TCCTCGGCCAGCCGGCGATCAGCGCGGCCTTGTCACGCCTGCGCGGGCTGTTTGATGACCCCCTGTTCGTGCGCACGGGGCGCAGCATGGAGCCTTCAGC CCGAGCGGTAGAAATCTTCGCCCTGCTCTCCCCGGCCCTGGACTCAATTTCCACCGCCGTGAGTCGCGCCGCCGAATTCGACCCCGCCACCAGCACCGCG GTATTCCGCATCGGCCTGTCCGACGACGTCGAATTCGCCCTGCTGCCGCAACTGCTCAAGCGCCTCCGCGCCGAGGCACCCGGCATCGTGTTGGTGGTAC GCCGCGTGAACTACATCCTGATGCCCGGCCTGCTGGCCTCCGGCGAAATCTCCATCGGCGTCAGCTACACCGCCGACCTGCCGGCCAACGCCAAACGCAA AGTCCTGCGTCGCAGCCTGCCGAAACTGCTGCGCGCCGACAGCGTGCCGGGCCCTCTGAGCCTGGACGACTTCTGCGCTCGCCCTCACGCGCTCGTGTCC TTTGCCGGCGACCTGAGCGGCTTCATTGATGAGGAGCTGGAAAAACTCGACCGTAAACGCCATGTGGTCTTGGCCGTGCCACAGTTCAACGGCCTCGGCA CGTTGCTGGCGGGCACGGACATCCTGGCGACAGTGCCGGACTACGCGGCCGAAGCATTGACCTCGGCGGGCGGGTTGCGGGCGGAAGATCCGCCGTTACC GGTACGCAGCTTTGAGCTGCACATGGCGTGGCGTGGTTCGCAGGATAATGATCCGGGAGAGCGGTGGTTGCGGTCGCGGATTCAGATGTTTTTTGGCGAC CCTGAGAGTCTTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTCGTCGGACAGGCTGTTTAGCTGATCATTTCTGCCTTTCCACAAACCATGGAGCTCCGTTCACTTCCAGTGGATTGCTACATTGGGGGCACATTTGA GGGCATGCATTGGATGCTTCGAAAAGGATGCCCCCAGCCTAAGGCCAAACAGGCTATTGATAAGGGCAGTTCCGATCGGAGTCTCTGCAAATCGATAGAC CGGCCTGAGGCTTTCAACATATCAGTGGGAATCCTGAGAGCTTTTAAAAAACAGGGAGCACCTGTGATCTGCCCTACCCTGATTATCACAGGACGTGGCG AGATCACCATAGGTGAGTCAAGTAGCCGCTCCGCTATTGGTCCTGCGCGAATCCCCCCCGCACTCTGTGCCGACAACACAGTAGCCAGCACCATCAACAC CGCTCCTGTCAACATCCGATATGACGGCGCTCCAGGAACAACCACCACGCGTAGGCCATGGCGTAGACCGGCTCCAGTGAGATGATTATCCCGGTGCTGC
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MNRNDLRRVDLNLLIVFETLMHERSVTRAAEKLFLGQPAISAALSRLRGLFDDPLFVRTGRSMEPSARAVEIFALLSPALDSISTAVSRAAEFDPATSTA VFRIGLSDDVEFALLPQLLKRLRAEAPGIVLVVRRVNYILMPGLLASGEISIGVSYTADLPANAKRKVLRRSLPKLLRADSVPGPLSLDDFCARPHALVS FAGDLSGFIDEELEKLDRKRHVVLAVPQFNGLGTLLAGTDILATVPDYAAEALTSAGGLRAEDPPLPVRSFELHMAWRGSQDNDPGERWLRSRIQMFFGD PESL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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