Pseudomonas fluorescens SBW25, PFLU3040
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0005975 | carbohydrate metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:SSF88713
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
Inferred from Sequence Model
Term mapped from: InterPro:PF01522
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides |
Inferred from Sequence Model
Term mapped from: InterPro:MF_01870
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| UniPathway | UPA00030 | lipopolysaccharide biosynthesis | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| UniPathway | UPA00036 | 4-amino-4-deoxy-alpha-L-arabinose undecaprenyl phosphate biosynthesis | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Hamap | MF_01870 | Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD [arnD]. | IPR023557 | 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable | 1 | 294 | 63.321934 |
| Gene3D | G3DSA:3.20.20.370 | Glycoside hydrolase/deacetylase | - | - | 4 | 250 | 1.7E-26 |
| PANTHER | PTHR10587 | GLYCOSYL TRANSFERASE-RELATED | - | - | 3 | 267 | 7.2E-20 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | IPR011330 | Glycoside hydrolase/deacetylase, beta/alpha-barrel | 13 | 237 | 4.17E-28 |
| CDD | cd10939 | CE4_ArnD | - | - | 4 | 290 | 0.0 |
| Pfam | PF01522 | Polysaccharide deacetylase | IPR002509 | NodB homology domain | 14 | 169 | 2.5E-13 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.