Pseudomonas fluorescens SBW25, PFLU3038

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30561
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:1901505 carbohydrate derivative transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01869
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30561
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009103 lipopolysaccharide biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01869
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
UniPathway UPA00030 lipopolysaccharide biosynthesis InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion 		0

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.3730.20 - - - 3 114 9.3E-23
SUPERFAMILY SSF103481 Multidrug resistance efflux transporter EmrE - - 36 113 3.53E-14
Pfam PF00892 EamA-like transporter family IPR000620 EamA domain 39 111 4.2E-8
Hamap MF_01869 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE [arnE]. IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE 2 115 30.555458
FunFam G3DSA:1.10.3730.20:FF:000002 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE - - 2 114 6.4E-37
PANTHER PTHR30561 SMR FAMILY PROTON-DEPENDENT DRUG EFFLUX TRANSPORTER SUGE IPR000390 Small drug/metabolite transporter protein family 1 112 4.3E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.