Pseudomonas fluorescens SBW25, PFLU3005
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGGGGTCTGGACGTTTATCGGCGCCCTGGGCGCCCGTGTCGGGATATCGCCGCAAGACAGCGGCGAGGTGCTGGCCGTTGCGACGGTCATGGGGATCG CCGGCGCCGCCTGTGCGTCGCTGATCGGCCCACGCCTGTCGCGCCTGCGATTGTTGCTGGCGGGCTATGCCCTGATGGCCGCCGCCGTGTTGCTCCTGCT GGGCCAACCGACGCTGATGCGCTTCGCCCTGGCGGCGCTGCTGTTCAAGTTCACCTGGACCTTCATCCTGCCGCTGATCCTCGCGTGCCTCGCCGACCTC GATCACAGCGGCAAGCTGATGAATGCCTCGAACCTGGTGATCGGCGGCGGCCTGGCCATCGGCCCGGCGATCGCCGGCCGGCTGATCGAGGTCAGCGGCA GCTTTACGGCGCTGTTGATCGGCGGCGCCGTGATCACCTTGTTGTCGCTGGCGATGATCCTCGCCAGCCGTCCTAAACCCGTCGTTGAAATGGAGCCTGT
|
|
| DNA Sequence for Gene |
>PFLU3005
ATGAACCGAACCACCGCGTTTTTCTTTGATGAAATGAGCCTTTGGCACAGCGCCAGCGCCCATGCATTGACCTTGCCCGTGGGTGGCTGGGTGCAGCCAC CGGCCGGCAGCGGGCATGCCGAGTCCCCCGAAACCAAACGGCGCATGAAAAGCCTGCTGGATGTGTCTGGGTTAAGCCATCACCTGGACATCCACAACGC TGCGGTCGCCAGCGAAACCGACTTGTTGCGCGTCCATGGCCGCGAATACCTGCAGCGCTTCAAGGCGCTGAGTGATGCCGGTGGTGGCGAGCTTGGGCCG CAGGCGCCGATAGGCCCGGGCAGCTACGAGATTGCCCGGCTCTCCGCCGGCCTGACCATGGCCGCCGTCGACACCGTGCTCAAGGGCCTCGCGGATAACG CCTACTCGCTGTCTCGCCCGCCTGGCCATCACTGCCTGGCGGACAGCGCCATGGGCTTCTGTTTCCTGGCCAACATCGCCATCGCCATCGAAGCCGCCAA GGCCCGCAGCGGGCTGGGCAAGGTCGCCGTGATCGATTGGGACGTACACCATGGCAACGGCACGCAAGCGATTTTTGAGGCGCGGGCGGATGTCTTGACG ATCTCGTTGCATCAGGACGGTTGTTATCCGCCGGGCTACAGCGGTGAACAGGATCGTGGTCGCGGCGCCGGGCGGGGAGCGAACATCAATATTCCCTTGC CGCCGGGATGCGGCCACGACGCTTACTTGCATGCGATGACGCGCATCGTGGTACCGGCGCTGGAGCGCTTCCAGCCGGAACTGATCATCGTCGCCTGCGG CTTTGACGCCAACGCCGTCGACCCACTCGCGCGGATGTTGCTGCACAGCGAGTCGTTTCGCCTGATGACCCGTTGCGTGCGCCAGGCTGCCGAACGCCTG TGCCAGGGGCGCCTGGTGCTGGTGCATGAAGGCGGCTACAGCGAAGCCTATGTGCCGTTTTGCGGCTTGGCGACGCTGGAGGAATTGTCCGGTGTGCGCA CAGCCGTGGAAGACCCGATGCTGGCACTGGTCGAGCTGCAGCAGCCCAAGGCGGCGCTGCTGGAGTTTCAGAAGCGGTGGATCGATCAGTTGGCAGCGGG CTTGATTGATTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGGGTGCGCACCGCCAATCGCCACACCCGCGCAATATCCGACGCCCGCTCACGCAGCAGGCGCGGCGCCTCGCTGCAGGCTTGCTCAAGGCTCATCGGCC CCGAAGGCAAGGCGAAAGCAGCATCCACGCCATGGGCATACATCTGCTCATAGCCCTCGCCCAGCGTGCCGGCAATCACAATGACCGGCACGTTGTGCTG CCGGGCGATACGTGCCACGCCGAACGGGGTTTTGCCGCGCAGGGTCTGGGCGTCGAAACGGCCTTCGCCGGTGATCACCAGGTCGGCGCCACGCACAGCT TCATCCAGGCCGACCAATTCGGCGACCACGTCTACACCGGCACGAAACTGCGCGCCCAGGAACGCCTTGGCGGCAAAGCCCAAGCCGCCGGCGGCGCCGC TGCCGGGTTCGTCGCGCACGTCGTTGGGCAGCACGCGGGCGCAGTGATCGGCAAAGTGACCAAGGGCGGCGTCCAACTGTTGCACTTGCTCGGGATTGGC
|
|
| Amino Acid Sequence |
>histone deacetylase family protein
MNRTTAFFFDEMSLWHSASAHALTLPVGGWVQPPAGSGHAESPETKRRMKSLLDVSGLSHHLDIHNAAVASETDLLRVHGREYLQRFKALSDAGGGELGP QAPIGPGSYEIARLSAGLTMAAVDTVLKGLADNAYSLSRPPGHHCLADSAMGFCFLANIAIAIEAAKARSGLGKVAVIDWDVHHGNGTQAIFEARADVLT ISLHQDGCYPPGYSGEQDRGRGAGRGANINIPLPPGCGHDAYLHAMTRIVVPALERFQPELIIVACGFDANAVDPLARMLLHSESFRLMTRCVRQAAERL CQGRLVLVHEGGYSEAYVPFCGLATLEELSGVRTAVEDPMLALVELQQPKAALLEFQKRWIDQLAAGLID
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|