Pseudomonas fluorescens SBW25, PFLU1378 (oprM)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGGTGTTCCTGTGCCTCGCAGCACTGTACGAAAGCTGGTCGATCCCGATTGCGGTCGTACTGGTCGTGCCACTGGGTGTCGTGGGCGCGTTGATCG CGACCAGCATGCGTGGGTTGTCCAACGACGTGTTCTTCCAGGTGGGCCTATTGGTGACGGTGGGCCTGGCGGCGAAGAACGCCATCCTGATCGTGGAATT CGCCAAAGAACTCCACGAACAAGGCAAAGGCATCGTCGAGGCGGCCATCGAGGCGTCCCGCATGCGTCTGCGGCCGATCATCATGACGTCGATGGCGTTC ATCCTCGGCGTACTGCCGCTGGCGATCTCCTCGGGCGCCGGTTCAGGCAGCCAGCACGCAATCGGTACTGGCGTAATTGGCGGTATGATCACGGCCACTG TGTTGGCGATCTTCTGGGTACCGTTGTTCTTCGCAACCGTGTCCGCCATCGGCGACCGTAAACCGAAAGAAACCAAGCAAACTCCTAAAGAGGCTGGCCA
|
|
| DNA Sequence for Gene |
>PFLU1378
|oprM
ATGAGCAAGTCGCTACTTTCCCTAGCCGTCACGGCATTCGTGCTCAGTGGCTGCTCGCTGATACCTGACTACCAGCGCCCTGAGGCGCCGGTAGCGGCAC AGTTCCCGCAGGGGCCGGCGTATTCGTCGGCCCAGGCGCCGAGCCAGGCCGCTGCCGAGCAGGGCTGGAAGCAGTTTTTCCATGACCCTGCCCTGCAACA GCTGATCCAGACCGCACTGGTGAACAACCGTGACCTGCGCGTCGCGGCCCTGAACATCGACGCGTATGCCGCGCAGTACCGCATCCAGCGTGCCGACCTG TTCCCGGCCGTGTCGGCCAATGGCAGCGGCAGCCGCCAGCGTGTGCCGGCACGTGCCTCGCAGACCGGCGAAGCGAACATCACCAGCCAGTATTCGGCCA CCCTCGGGATCAGCTCCTATGAGCTGGACCTGTTCGGCCGTGTGCGCAGCCTGAGTGAAGAAGCGCTGCAGAAGTACTTCGCCACTGAAGAAGCACGCCG CAGCACCCAGATCAGCCTGGTGGCCAGCGTGGCCAACGCCTACCTGACTTGGCAAGCCGACAAGGAACTGCTCAAGCTGACCCAGGACACCCTGGGCGCG TTCGAGCAGAGCTTCAAGCTCACCTCGCGCAGCAACGAAGTCGGCGTGGCCTCGGCCCTCGATCTGAGCCAGGCGCGTACCTCGGTAGAAAACGCCCGCG TACAGCTTGCCCGGTATACCCGCCAGGTCGCCCAGGACGAAAACAGCCTGACCCTGCTGCTGGGCACCGGCCTGCCGGCGAATATCGCCAGCAAGCCGCT GTCGGATGACCTGCTCAGCGAAGTACCGGCCGGGTTGCCGTCGGACTTGCTGCAACGTCGTCCCGACATCCTGCAGGCCGAGTACAACCTCAAGGCCGCC AACGCCAATATCGGCGCGGCCCGTGCCGCGTTCTTCCCGAGCATCAGTTTGACGGCCAACGCCGGCACCCTGAGCCCGGACCTCGGCGGCTTGTTCAAAG GCGGCTCGGGCACCTGGTCGTTCGCCCCGCAGATCAACATCCCGATCTTCAACGCCGGCAGCCTGCGCGCCAGCCTGGACTACTCGAAGATCCAGAAAGA GATCAACGTGGCGAACTACGAGAAGGCGATCCAGACCGGCTTCCAGGAAGTCTCCGACGGCCTCGCCTCGCGTGAAACCTACAAGCAGCAGTTGGAGGCC CAGCGTGGCTTCGTCGCGGCCAACCAGGATTACTACCGCCTGGCCGAGCGTCGCTACCGCATTGGTGTCGACAGCAACCTGACGTTCCTCGATGCCCAGC GCCAACTGTTCAGTGCCCAGCAATCGCTGATCACTGACCGCCTGGCGCAGCTGACCAGCGAGGTCAACCTGTACAAGGCCCTCGGCGGTGGCTGGAACGA GCAGACCGCGAAGAACGAGCCGTTGAAAGAAGAAGCACCGGCACTGAAGTTGTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGCTGGCGTAAACAAAAAACCGCTTCCCTCACCGGAAGCGGTTTTTTTATGCCCGTTTTTGGCGCGAACGTAGGTTGCCTTGCTTTTCGCCCAACCTTTC AGGATAAAATTGGTTACAGATTCTTACAGACCACAGAGGGAGCTTGTCGTAATGATCGTAGGAATCGACCTGGGGACCACCAACAGTCTCGCGGCCGTCT GGCGCGGTGATGCCGCCGAATTAGTGCCCAATGCCCTTGGCCAGTTGCTGACCCCCAGCGTGGTCGGGCTGGATGATCAAGGCCGTGTCCTGGTAGGCCA GGCAGCCAAAGAGCGCTTGCACACCCACCCGCACCTGACCACTTCGCTGTTCAAGCGCTACATGGGCAGTGCCACCGAAGTGCGCCTGGGCGATCGCTCG TTTCGCCCGGAAGAACTCTCCGCGCTGGTGCTCAAAAGCCTCAAGGAAGACATCGAGCGCACCTACGGCCACACCGTCACCGACGCCGTGATCAGCGTGC
|
|
| Amino Acid Sequence |
>outer membrane protein
MSKSLLSLAVTAFVLSGCSLIPDYQRPEAPVAAQFPQGPAYSSAQAPSQAAAEQGWKQFFHDPALQQLIQTALVNNRDLRVAALNIDAYAAQYRIQRADL FPAVSANGSGSRQRVPARASQTGEANITSQYSATLGISSYELDLFGRVRSLSEEALQKYFATEEARRSTQISLVASVANAYLTWQADKELLKLTQDTLGA FEQSFKLTSRSNEVGVASALDLSQARTSVENARVQLARYTRQVAQDENSLTLLLGTGLPANIASKPLSDDLLSEVPAGLPSDLLQRRPDILQAEYNLKAA NANIGAARAAFFPSISLTANAGTLSPDLGGLFKGGSGTWSFAPQINIPIFNAGSLRASLDYSKIQKEINVANYEKAIQTGFQEVSDGLASRETYKQQLEA QRGFVAANQDYYRLAERRYRIGVDSNLTFLDAQRQLFSAQQSLITDRLAQLTSEVNLYKALGGGWNEQTAKNEPLKEEAPALKLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|