Pseudomonas fluorescens SBW25, PFLU1336
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGTAGCGGTTGTTGAGCTCCAGCTCGATCTGCACCTGCGGATACTGTTTGGAAAACTCCAGTAACAAGCCATCGAAAAAGGTTTCGCCCAGCGACACC GGAACCGTCATACGCACAGGCCCGGCCAGGTCATCCTTAAGCCGAGCCAGTGCCTGGCGGGCGCGATCCACTTGCACCACCAATGCCTGGGCCTGGGGCA GCAATGCCGCACCCGCAGCAGTCAGGCTGAGTTTGCGCGTGGTGCGATGCAGCAATACCACGGAAAACTGCGCCTCCAACTGGCTGATCCGCTTGGACAG CTGCCCTTTGCTGCAGCCCAGTTGCTCGGCGGCCAGGGTGAAACTACCGGCTTCTATCAGTACGGCAAAGGCCGCCAGATCATCCATCTCGCTCATGGAT TGTTTCCATTTGAAAACCAAAGGTTGCCTATTAGCACGTTTATCCACCCAAAAAGCCACTCTAGACTGACCCTTCACTTAAACCCTGGAGGAACAGCACC
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| DNA Sequence for Gene |
>PFLU1336
ATGAAAATCCTATTGATTGGCGCCAGCGGCACGATTGGCTCGGCGGTCAAGACCGAACTCTCTCAGCGTCACGAAGTGATCAGCATCGGCCGCAGCGGCG GCGACTTCCGGGTGGATATCAGCGACAGCGCCTCAATCCGTACACTGTTCGAACAGACCGGCAAGTTCGATGCCCTGATCTGCGCAGCCGGCAGCGTGAA CTTCGTGCCGCTGGGCGACATGCGCGAAAGCGACTTCGAGCTGGGCCTGCGTGACAAGCTGATGGGTCAAGTCAACCTGCTGCTGATCGGGCGTGAATAT GCCAACGACGGCGCCTCGTTTACCTTCACCAGCGGCATTCTCAACCGCGACCCGATCCGCACCGGCGCTTCGGCTTCGTTGGTCAATGGCGCCATTGACG CCTTCGTAAAAGCCGCCGCAATCGAATTGCCGCGCGGCCTGCGCGTCAACTCCGTCAGCCCGACCGTGCTGTTGGAAGCCATGGGCAGCTATGCGCCGTA CTTTCGTGGCTACAAACCGGCGCCCGGAGCCGAGGTGGCATTGGCCTACGCGAAAAGTGTCGAAGGCTTGCAGACGGGTCAGACCTTTATCGTTGGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATCGGATGCCTGTCGGAATTGACTGAAGCTGGCGACCGGGGTTGTGATGCAACGCAGGTCTGCGTAACGTGGCGGCACTTGTCTGGAGACCCGATAATGC GTGCCGCCCATAGCCTTGCCCTGTTTGCCTTGCTTCCCCTGTTCGCCGCCTGCCAGATGTTCGACAGCGAGCCGGCAAAGCCCTCTCTCGCGGGACTGAC CCGTATGCAGGGCGAACTCACGGCGGTCGGCGGCAAACTGTTGTTCCAGCCGTGCAACGACAAACGCAACTACGTGGTCAACGACACCAGCGGCACCAGC GTCCTGCAGGAGGCGGCCTCCTTGGCCGGCCAGCAAGGTGCGCTGTTCGCTGACCTGCGTGGCCAGTTCTCCGGCGTTGCCAGCGGCACCCAGGGCAGCG TGGACCTGCAACAGCTCTACCGCATGGAGCGCTCGACCTCGGCCTGCAACGACCCGGACTTCAAACGCACGATCCTGCGCGCCAATGGCCACAACCCGGC
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| Amino Acid Sequence |
>short chain dehydrogenase
MKILLIGASGTIGSAVKTELSQRHEVISIGRSGGDFRVDISDSASIRTLFEQTGKFDALICAAGSVNFVPLGDMRESDFELGLRDKLMGQVNLLLIGREY ANDGASFTFTSGILNRDPIRTGASASLVNGAIDAFVKAAAIELPRGLRVNSVSPTVLLEAMGSYAPYFRGYKPAPGAEVALAYAKSVEGLQTGQTFIVG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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