Pseudomonas fluorescens SBW25, PFLU1225 (wspR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd01949 GGDEF IPR000160 GGDEF domain 171 330 4.26084E-60
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 163 333 1.2E-51
Gene3D G3DSA:3.40.50.2300 - - - 4 152 1.2E-31
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 18 130 1.1E-18
CDD cd17575 REC_WspR-like - - 16 143 1.94981E-83
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 153 331 2.8E-58
SMART SM00267 duf1_3 IPR000160 GGDEF domain 154 333 1.2E-55
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 173 330 2.59E-47
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 16 130 6.7E-21
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 14 146 4.27E-29
PANTHER PTHR45138 REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM - - 60 331 7.8E-68
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 169 329 4.1E-49
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 164 330 1.6E-49

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.