Pseudomonas fluorescens SBW25, PFLU1203 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTGATAATGCCAGTCAGTTAGGAGGTAGAAAGGGTAAAAAGTACCTTGTGGCGAGGGAGCTTGCTCCCGTTGGCCGCGAAGCGGCTCCAGCACATTGTTT GAGAATGCAGGGACTGCTACGCAGCCCAACGGGAGCAAGCTCCCTCGCCACAGGACAGTGTTCACCCTTGACTGAATGGTAAATAGAGCAAATCTCTACA GATCCATCGCTGTCGGCGGCGATCCAAAGCTCTCCACCCTCCTGAAAGTGCTTCAGGCGTTAGGTGTAGGCATGTCTAAAGTTGTCTCGCACCGCGCGGA GCAAGACATCCGGGTTTAAGAGCGGGGTAAGGTCCGTGCGAATGACCCACTGCAGCGCTCGTCGCATTTCCCTGCATAAAGCTGGTCAAGTGCGCTGCCC GTCGCTAGAATTGCGCACTTTTTGATCAGAGGCACACCAAGTGCCCATCCGCAGCCCTGTCGTGCCCGACTGGCGGCGTCATTCAATACCGAGGTTAGAC
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| DNA Sequence for Gene |
>PFLU1203
|rimO
ATGTCCACCACCACCGCAAAAGCCAACCCCAAGGTTGGCTTTGTTTCCCTGGGTTGCCCGAAGGCTCTGGTCGACTCCGAGCGCATCCTCACGCAACTGC GTATGGAAGGCTATGACGTTGTGTCCACCTACCAGGACGCCGACGTGGTGGTGGTCAACACTTGCGGCTTCATCGACTCGGCCAAGGCAGAGTCCCTGGA AGTGATCGGCGAAGCCATCAAGGAAAACGGCAAGGTCATCGTGACCGGCTGCATGGGCGTGGAAGAAGGCGCTATCCGCAACGTGCACCCGAGCGTGCTG GCGGTGACCGGCCCGCAGCAGTACGAGCAGGTGGTCAACGCCGTGCACGATGTAGTGCCGCCGCGCCAGGACCACAACCCGCTGATCGACCTGGTGCCGC CGCAAGGCATCAAGCTGACCCCACGCCACTATGCGTACCTGAAGATTTCCGAAGGCTGCAACCACAGTTGCAGCTTCTGCATCATCCCGTCGATGCGCGG CAAGCTGGTCAGCCGTCCGGTCGGTGACGTGCTCGATGAGGCCCAGCGCCTGGTCAAATCCGGCGTCAAAGAGCTGTTGGTGATCTCCCAGGACACCAGC GCCTACGGCGTCGATGTGAAGTATCGCACCGGTTTCTGGAACGGCGCGCCGGTGAAAACCCGCATGACCGAACTGTGCGAAGCCCTCAGCAGCCTGGGTG TGTGGGTGCGCCTGCACTACGTTTACCCGTACCCGCACGTGGACGAACTGATTCCGCTGATGGCCGCCGGCAAGATCCTGCCGTACTTGGACATCCCGTT CCAGCACGCCAGCCCGAAGGTGCTCAAGGCCATGAAACGCCCGGCCTTCGAAGACAAAACCCTGGCGCGCATCAAGAACTGGCGCGAGATCTGCCCGGAA CTGATCATCCGTTCGACCTTCATCGTCGGCTTCCCCGGCGAAACCGAAGAAGACTTCCAGTACCTGCTGGACTGGCTGACCGAAGCCCAACTGGACCGCG TCGGCTGCTTCCAGTACTCGCCGGTCGAAGGTGCCCCGGCCAACCTGCTGGACCTGGCCGTGGTGCCGGACGACGTCAAGCAGGACCGCTGGGAGCGCTT CATGGCGCACCAGCAGGCCATCAGCTCGGCGCGTCTGCAGCTGCGTATCGGCAAGGAAATCGAAGTGTTGATCGATGAAGTCGACGAGCAAGGCGCCGTC GGCCGTTGCTTCTTCGATGCGCCGGAAATCGACGGTAACGTGTTTATCGACGACGCCAGCGGCCTGAAGCCGGGCGACAAGGTCTGGTGCACCGTGACCG ACGCCGACGAATACGACCTGTGGGCTGAAAAGCGCGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGGCCACCCCATAAAAAGCCCTGCATCTGATCAAGATGTGGGGCTTTTTTAGGTCTATCGTTTGCCCATCGCCAATCATCGGCAGGGGCAGCGAGCATG CGTCGGCATTCGGTTATCCACACACCTAAAACCAGCGATTATCAAAAACTGACTGAAATATGGGAGTCCTCCGTGCGGGCGACCCATGATTTTTTGCCGG ATAGCTACATCGAGCACCTGAGGCACCTGGTGCTGACTCACTATCTGGACACGGTGATGCTGATTTGCACCAAAGACTCGCACCAACGCATCACCGGGTT TGCCGGGGTGGCCACAGGTAAAGTCGAAATGTTGTTTATCGACCCGAAATACCGGGGCCAGGGCCTTGGCCGGCAATTGCTGCGCTATGCGATCGAGCAT ATGAACGCCGACGAGCTGGAAGTGAACGAGCAGAACCCCCAGGCGCTGGGCTTTTACCTCAAACAGGGGTTCGAGGTGATCGGACGCACGGAGCATGATG
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTTTAKANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGAIRNVHPSVL AVTGPQQYEQVVNAVHDVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTS AYGVDVKYRTGFWNGAPVKTRMTELCEALSSLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWREICPE LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDLAVVPDDVKQDRWERFMAHQQAISSARLQLRIGKEIEVLIDEVDEQGAV GRCFFDAPEIDGNVFIDDASGLKPGDKVWCTVTDADEYDLWAEKRD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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