Pseudomonas fluorescens SBW25, PFLU1134

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 12 123 1.3E-29
Gene3D G3DSA:3.40.50.2300 - - - 9 144 2.6E-30
Gene3D G3DSA:1.10.10.60 - - - 395 449 6.2E-14
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 14 122 1.6E-25
CDD cd17549 REC_DctD-like - - 14 143 1.05276E-66
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 153 382 4.44E-68
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 364 447 9.86E-11
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 405 445 1.2E-9
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 13 448 0.0
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 11 198 3.27E-42
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 411 428 1.2E-9
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 145 323 1.2E-63
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 153 319 8.1E-67
Gene3D G3DSA:1.10.8.60 - - - 324 392 5.0E-22
CDD cd00009 AAA - - 158 317 1.34713E-21
FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC - - 145 323 1.4E-72
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 173 314 2.4E-9
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 428 448 1.2E-9
FunFam G3DSA:3.40.50.2300:FF:000018 DNA-binding transcriptional regulator NtrC - - 10 140 4.0E-39

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.