Pseudomonas fluorescens SBW25, PFLU0983 (algL)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05426
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0042597 periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00557
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0042122 alginic acid catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00557
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0045135 poly(beta-D-mannuronate) lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00557
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG (InterPro) 00051 Fructose and mannose metabolism InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion 		0

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00557 Alginate lyase [algL]. IPR022859 Alginate lyase 4 370 75.421745
CDD cd00244 AlgLyase IPR022859 Alginate lyase 23 362 0.0
Gene3D G3DSA:1.50.10.100 Chondroitin AC/alginate lyase IPR008929 Chondroitin AC/alginate lyase 27 363 1.7E-130
Pfam PF05426 Alginate lyase IPR008397 Alginate lyase domain 63 304 1.0E-62
SUPERFAMILY SSF48230 Chondroitin AC/alginate lyase IPR008929 Chondroitin AC/alginate lyase 19 362 1.37E-62

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.