Pseudomonas fluorescens SBW25, PFLU0884

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0042597 periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03002
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0001530 lipopolysaccharide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03002
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015920 lipopolysaccharide transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03002
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR03002 JCVI: lipopolysaccharide transport periplasmic protein LptA IPR014340 Lipopolysaccharide export system protein LptA 24 173 6.0E-43
Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. IPR014340 Lipopolysaccharide export system protein LptA 4 173 23.812828
Pfam PF03968 LptA/(LptD N-terminal domain) LPS transport protein IPR005653 Organic solvent tolerance-like, N-terminal 34 147 1.1E-23
PANTHER PTHR36504 LIPOPOLYSACCHARIDE EXPORT SYSTEM PROTEIN LPTA - - 4 176 1.5E-32
Gene3D G3DSA:2.60.450.10 Lipopolysaccharide (LPS) transport protein A like domain - - 26 177 4.7E-39

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.