Pseudomonas fluorescens SBW25, PFLU0647
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGTGCTGTTGTTCCTGCGCCAGGATGCCAGTAATGCCGAACAGTCGGCCCAGATCGTGCTTCCGGCCATGCGCCTGCTCAGCGTCGGCGACCAGATGGGC TTGGCCAACGATGGCCTGCCCGCGGTGCCACCACCGGTCACGGTTGAAGAACGCGCCCAGGCCGCCCAACGTCGAGCCGCCGCACGTACCGTGGTGCTCG CCGTACCGGAGCCACTGTTAAGCCGCCTGATGCTCGCGGCTCAAGCCGGCACCCTGCGCCTGGCCGTACGCAGCGCCGAGGAACACCTGCTCAGCCGCTA CTGGGCCGGCGAGAGCGAAGCACCGCAGAAGATGGAAAGCGCCAACCGCGATCTCTACCAATTCACCCAGCTGGCCCTGACCGGCCCGCCCAAACGCATC GCGCCAGCCGGTGGCGAACCGAGCGTGCGCCGAGGCATTGAAGTGATTCGCGGTGCCCAAGGGGCGCCACAAACTCCGTGATCGAGCAAGGATGCCTTGA
|
|
| DNA Sequence for Gene |
>PFLU0647
ATGAGCCAGCGCTACGCACCCCTGTTCATGCACATGGCTTGGGCCCTGATGCTCTCGAGCCTGCCCGTCGGCATGGCCCTGGCTGCACCGGGCAACTGCA GCGCCCTGGGCCAGTTGCCGGCCGTGGTCGAGGTGGGAGAAGGCTTGCAACAGGAGCTGCAATCGCCGGTGGCAATCACCCGCCTGGCCATCGGTGACCC TAAAATCGCCGACGTGCGGGTCAACGGCGACCGTCATTTCCTGCTCACCGGGGTCGCGTCCGGCGCCACCAGCCTGATGGTATGGACCGCCTGCGCGAGC ACGCCGCGTCAAAGCATGGTGTTCGTCAAGGGCAGGGCCACTTCGGCGCTGACCAGCCTGTCGCTGTCGCCGTCGGAAGATCCCCTGCTGCCCAGCCAGG TGCAGACCGACATCCGCTTTGTGGAAGTCAGCCGCACCAAGCTCAAGGAGGCGAGCACCCGACTGTTAGGCACCGGCAAAAACTTTTTCCTCGGCAGCCC CAACCTGCTGTCACCCTCGGAGGGGGTCTTCAAATTGCCGGTGAGCACTGACAGCTTCAACGTCGGTTTTGGCGGCGGCCGGGTCTCGGCCATGATCAAC GCGTTGGAACGCAGCGGCTTTGCCTACACCCTGGCGCGCCCCAGCCTGGTGGCCATGAGCGGCCAGAGTGCCTCCTTCCTGGCCGGCGGCGAGGTGCCCG TCCCGGTGCCCAGCGCCGGCAGCGACACCATCTCCATTGAGTACAAGGAGTTCGGCATTCGCCTGACCCTGACCCCCACGGTGATTGACCGCAACCGCAT CACCCTCAAGGTGGCGCCGGAAGTCAGCGAGCTGGACTACAGCAACGCCGTCATCATCCAGGGCATCCAGGTGCCGGCACTCACCGTGCGCCGCACCGAC ACTAGCGTGTCCCTGGCCGATGGCGAAAGTTTTGTGATCAGCGGCCTGATCAGCACCAACAACCGCTCCACGATCAGCAAGTTTCCAGGGCTGGGCGATA TCCCGATCCTGGGGGCGTTTTTCCGCGATTCCAATATCAGCCGCGAAGAGAAAGAACTGCTGATGATCGTCACGCCGCACCTGGTGCAGCCGTTGGCCGC CAACGCCCAACTGCCCTCGTTGCCCGGCGAGAAACTGCGCAGTTACGACCCGAACTGGTTCCGGCTGTTCTTCTTGGAAAACGGTAATTTCGACCGTCGC AGTGGACTTTCCCAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGATAGCCTGAGCCAGACCTTCCTCGCCATCACCCGCAACGCCACCGACCTGGAGTGGCTGCAGGGCGCCCTGGCGCCCCTTGGCCAGGTCGTCAGCGT CGGCACCGGCAGCCTGGACGAGTTGCTGGCGCTGGTGGACGTGACGTTCGCCAGCCTGGTGTTTGTCGGCCTCGACCGGGAAAACGTGGTCACCCAGAGC GCGCTGATCGAAGGTGCCCTGGAGGCCAAACCGATGCTCGCGGTGGTCGCCCTCGGCGATGGCATGGACAACCAGCTTGTCCTGAACGCCATGCGGGCCG GCGCCCGCGACTTCGTGGCCTACGGCTCACGCTCCAGCGAAGTGGCGGGCCTGGTGCGCCGCCTGAGCAAGCGCCTGCCAACCGTCGCCCACAATGCGCA GCTGGGCGGTCTGACCGTGCTGTTTGGCACCCAGAGCAACGCCGATGGCGCCATGCTGGCGACGCACTTGGCACTGGTGGTGCAGAAAAGCGGGCAGCAA
|
|
| Amino Acid Sequence |
>putative type II secretion system protein
MSQRYAPLFMHMAWALMLSSLPVGMALAAPGNCSALGQLPAVVEVGEGLQQELQSPVAITRLAIGDPKIADVRVNGDRHFLLTGVASGATSLMVWTACAS TPRQSMVFVKGRATSALTSLSLSPSEDPLLPSQVQTDIRFVEVSRTKLKEASTRLLGTGKNFFLGSPNLLSPSEGVFKLPVSTDSFNVGFGGGRVSAMIN ALERSGFAYTLARPSLVAMSGQSASFLAGGEVPVPVPSAGSDTISIEYKEFGIRLTLTPTVIDRNRITLKVAPEVSELDYSNAVIIQGIQVPALTVRRTD TSVSLADGESFVISGLISTNNRSTISKFPGLGDIPILGAFFRDSNISREEKELLMIVTPHLVQPLAANAQLPSLPGEKLRSYDPNWFRLFFLENGNFDRR SGLSQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|