Pseudomonas fluorescens SBW25, PFLU0548
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GACAGGCCGACGGCGAAGTCGCAGATGTCGATCATTTCCTGCACTTCACCCAGGCCTTCCTGGGTGATCTTGCCGGCTTCCCAGGACACCAGCTCGCCCA GGTCGGCCTTGTATTCACGCAGTACATCGCCAAATTGACGTACCAATTCGCCACGGCGCGGTGCCGGCACTTTGCGCCAGGCTTCGAATGCATGCTCGGC GCGACTGACCTGTTGCTCCACCTCGGCCGCGCCCTCCCAGTCCACGGCGCCGATGCGACTGCCATCAATCGGCGAATGCACAGGCTGTTTGCCCGACTGG TACAGCGCCGGGTTTACCCCGAGACGATCAAGCAATGCGGCAACCATGGGTCACTCCTTCAATCTGCAAACAAAAAATTGCGCCGCGGCCCGCACGGCGA TCCAGGCCTTATTTGTAGCTGGCCCAAGACTTGCCAACAAACGACGATTAGGCGAGATATCATTCCGTTTATTCATGCAAAGAATAAAAAGAGGCGTGCC
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| DNA Sequence for Gene |
>PFLU0548
TTGCTGAACAAAAGACATTTGCCCTCGATCACTGCCCTGCAGTGTTTCGAAGCCGCGACCCGCCACCTCAGCTTTACCCGCGCCGCCGAGGAGCTGAACC TCACGCAAAGCGCGGTGAGCAAGCAGGTGGCGCAGTTGGAAGAATTGCTGCAACACCTGCTGTTTCGTCGGGTGCGCCGCCGCTTGCAGATGACCCCGGC GGGTGACCTGTACCTGGTGGAGGTGCGCAAGATCCTTACGCAGGTGGAGATGTCCACCCACTATTTGCGCTCCTATGGCGGCGAGACCGAAGTGTTGCGC GTCTCCACGCCCTACACCTTCGGCGCGCGCTGGCTGGTGCCGCGCCTCAAGGGCTGGCGGCTGCGTCATCCGCAGATCCACCTGGACCTGTGCAACGAGC AGGACGCGGACGACCTGCTGCAAGGCAAGGCCGATATGGCCTTCTACTTCGGCCAGGGCTCACGCCCCGGCACCGAGAGCCTGAAACTCTTCAGCGAGGA GCTGGTGCCGGTGTGCGCGCCGGAGAGCTTGCCGGCGCAGCCGTTCACCGATCCCACGCAACTGAGCGACCTGGTGCTGCTGCAAAACGCCTCGCGGCCA CAGGGCTGGCATGACTGGTTCGCCAGCCAGGGCTTCCACACCGAGCACAGCTATCACGGGCCGCGTTTCGACACCTTCTATATGTGCATTCGGGCCGCGC AGGTAGGGTGTGGTGTCGCGCTGCTGCCGCGGTTTCTGGTGGAGGAGGAATTGGCCGACGGTAAGTTGGTGATTCCTTGGCAGCATGCGATGCCGAGTCA GGACGCGTATTACCTGGCCTACCCGGAGCATTCGGCGGAAGTGCCCAAGGTGCGGGATTTTGTGAAGTGGATGATGGAGCAAGTTATTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCCTGGAATACCGCTATCGGGAGCAAGCCCCCTCCCACAGTTGGAATGCATTTCAACTGTGGGAGGGGGCTTGCTCCCGATAGCGCCGGTGGCCTTGGC AAAAAAATCACTGGCAAACCGACCCACGTCTATGCGCCACTAGCCCCCTTCCTTAATTGTGCGTAAAGGTCGGCACCCATCGCCGACCCGTCTGGAGATT CCCGTTATGAGCGAGAGTGTGTTTGCCGATCGCATCGTGCAGAACTTGCTCGACACCGACTTCTACAAGCTGACCATGATGCAGGCGGTGCTGCACAACT ACCCCAACGTGGAAGTTGAATGGGAGTTTCGTTGCCGCAACAGCGAAGACCTGCGCCCGTACCTGGCGGAGATCCGTTACCAGATCGAACGCCTCGCCGA GCTGAGCCTGAGCCCGGATCAGTTGGGCTTCCTGGAGCGCATCAGCTTCATGAAGCCGGACTTCCTGCGGTTCCTCGGGCTGTTCCGCTTCAACTTGCGT
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MLNKRHLPSITALQCFEAATRHLSFTRAAEELNLTQSAVSKQVAQLEELLQHLLFRRVRRRLQMTPAGDLYLVEVRKILTQVEMSTHYLRSYGGETEVLR VSTPYTFGARWLVPRLKGWRLRHPQIHLDLCNEQDADDLLQGKADMAFYFGQGSRPGTESLKLFSEELVPVCAPESLPAQPFTDPTQLSDLVLLQNASRP QGWHDWFASQGFHTEHSYHGPRFDTFYMCIRAAQVGCGVALLPRFLVEEELADGKLVIPWQHAMPSQDAYYLAYPEHSAEVPKVRDFVKWMMEQVI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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