Pseudomonas fluorescens SBW25, PFLU0088 (algB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGCCAATGCTGCAACTGCTGGCCGCCAATCAACGTGACCATCAAGGCCAGGCTGGCAAACAGACCTTGCTGCAAGCGCAGTGGCGATACACGCAGTGG GCTGAAGCTTTGGCGAGTCATGCTGATGTTCTCCCGCATTCTGATTATTCGTTAGGAGAGGTATTGCAGAGCGCATGCCAGCTTTTTTACAAAATAAATA CCAATAAAATCAATGAGTTAAATATTTATAAACCAACAAGCTTCCAGCATCCTGCACGATGCCCCCTTGAGGGCCGTGCGAAATGCACGATAGCCAGCGG TCGGATCAAGGGATAGAACACGGAGGGTGTGTTGCCGAAGTGGCAAGACGGCATGAAAACGCCAGCAATCGGCGCCTTGTAGGAAGTGATGCAGATACCT GCACAACGTTGTCTTTTATCGATCAGAATAAACCATGCAACTTGCCCGATTATTCCGGGACTAAACACCATCATTCATAGAGTTAAGGAGCGCGGGACAG
|
|
| DNA Sequence for Gene |
>PFLU0088
|algB
ATGGAATCAGCCAAGGAACTTCAAGGCCGCATTCTTTTAGTGGATGACGAATCCGCGATCCTCCGCACCTTCCGTTATTGCCTGGAAGATGAGGGCTACA CCGTCGCCACGGCGAACAGCGCTGCCCAAGCGGATACCTTGATGCAGCGCCAAGTGTTCGACCTGTGCTTCCTGGACTTGCGCCTGGGTGAAGACAACGG CTTGGACGTACTGGCCCAGATGCGCATCCAGGCGCCATGGATGCGTGTGGTCATTGTCACCGCCCATTCGGCGGTCGACACTGCCGTTGATGCGATCCAG GCCGGTGCCGCTGACTACTTGGTAAAGCCTTGCAGCCCAGACCAACTGCGCCTTGCCACTGCCAAGCAGCTGGAAGTGCGTCAACTCTCTGCGCGCCTCG AAGCCTTGGAAGGCGCAGTGCGCCAACCGAAAGACGGCCTTGATTCCCACAGCCCGTCGATGATGGTAGTACTGGAAACCGCACGCCAGGTGGCTGGCAC AGACGCCAACATTCTGATCCTGGGTGAATCCGGCACGGGTAAAGGTGAACTGGCCCGAGCCATTCACGGCTGGAGCAAGCGCTCGAAGAAATCCTGTGTG ACCATCAACTGCCCGTCGCTGACGGCGGAACTGATGGAGAGCGAGCTGTTCGGCCATAGTCGTGGTGCCTTTACCGGCGCCAGTGAAAGCACCTTGGGCC GTGTCAACCAGGCGGACGGCGGCACGCTGTTTCTCGACGAAATCGGCGATTTTCCGCTCACGTTGCAACCTAAGTTACTGCGCTTTATCCAAGACAAAGA ATATGAGCGGGTCGGTGACCCCGTTACCCGACGTGCGGATGTGCGCATCCTCGCCGCCACCAACCTGAACCTGGAAGACATGGTGCGTGATGGCCGCTTC CGCGAAGATCTGCTCTACCGCCTCAACGTGATCACCCTGCACTTGCCGCCGCTGCGCGAACGTAGCGAGGACATCCTGACCCTGGCCGACCGCTTCCTGG CACGTTTCGTCAAGGACTACGCCCGACCGGCGCGCGGTTTCAGCGACGAAGCGCGCGAGGCCCTTCTCAACTACCGCTGGCCGGGAAATATCCGCGAGCT GCGCAACGTAGTAGAGCGCGCCAGCATCATTTGCCCGCAAGAGAAGGTAGAAATCAGCCACCTGGGGATGGCCGAGCAGCCGACCAACAACGCTCCGCGG ATCGGCGCGGCGCTGAGCCTGGACGAGCTGGAGAAAGCTCACATCGGCGCCGTGCTCGCCACCAGCGACACCCTGGACCAGGCGGCTCGCACCCTGGGTA TCGACGCGTCGACCCTGTACCGCAAACGCAAACAGTACAACCTGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCTGTACCCTATGAAGTTAGCGATGAAGCTGCGCACTCGGCTATTCCTGAGCATCTCAGCGCTGATCACCGTTGCCCTGCTGGGTTTGATCCTGGGCCTG GTCAGCGTCATGCAAATGGCCAAGACTCAGGAATCCCTGATTCGCAGCAACTTCATCACCTTGGACCTGGGCCTCAAGCTGCGTCAGAGCCTGGGTGATC AGTTGATCATGATGCTGGAGGAGCGCCCCGACCCCGAGGCCTTGCAAACCTCCAAGCAGCGCTACGTCGACCTGCTGGACCAAGGTATCGCCCATGAACA ACGCGACGGTCGCGGGACGGGGTTCAGCCAGGCCAAGGGCCAGTATCAGGAACTGCTGAACGCTTTTGACGAGTCCCAGCAACCGACCCCTCCACCTGGG GCCAAGGAAAAACTCACCGACACCTTCAATGCGCTGCGCAATGGCTTGATCAACGAGCACAAGCAGGCCTTGGAGAACATCAGCAACAGCGAACACAAAT
|
|
| Amino Acid Sequence |
>alginate biosynthesis transcriptional regulatory protein
MESAKELQGRILLVDDESAILRTFRYCLEDEGYTVATANSAAQADTLMQRQVFDLCFLDLRLGEDNGLDVLAQMRIQAPWMRVVIVTAHSAVDTAVDAIQ AGAADYLVKPCSPDQLRLATAKQLEVRQLSARLEALEGAVRQPKDGLDSHSPSMMVVLETARQVAGTDANILILGESGTGKGELARAIHGWSKRSKKSCV TINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADGGTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRF REDLLYRLNVITLHLPPLRERSEDILTLADRFLARFVKDYARPARGFSDEAREALLNYRWPGNIRELRNVVERASIICPQEKVEISHLGMAEQPTNNAPR IGAALSLDELEKAHIGAVLATSDTLDQAARTLGIDASTLYRKRKQYNL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|