Pseudomonas fluorescens F113, PSF113_5838
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGGTCGGTGAGGGCACCCACCAGGTTGCGCAGGCGATGAGCGTCGCTGAACACCTCGGCGCTGCCGTAGGCGTGTACGGCCACGTAGTTCCAGGTCGG CACGACTTTGCCGTGTTCGGCCTTGCTGGCGTACAACCCTGGGCTGACGTAGGCCTCGGCCCCGGCGAATATCACCAGGGCCTCGGCGCCGGCTTCCAGG TCGCGCCATTGTGGATTGGCCCGGGCCATGTGGCCGTAGAGGCTTCCGTTCGGCCCTTGTTGCGTGTCCAGCAACAGCGGCAAATGACTGGCCTGCAAAC CGTGTTCACCCTGGGTGACCAATACGGCCAGGCGGCAATCGCCGATCATCTGGTGCAGTTCGGGCAGGTCTTCGACGGCAAAGGCTTTGGGGTTGTACAT GATGATTTTCCTTGGCGAATGCGAGCATCCTAGGCAGGCTATTGGTCTGTTGTAAGAGCCACTTCCGACCAATTCGATAGGTCCATTCGTGAGGGCTGTC
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| DNA Sequence for Gene |
>PSF113_5838
ATGCACAACGCCGCGCCGCCATTGTCGTTCAACCCCGCAGGCATCGAGCTGGACCGCCGCCAGGGGCTCAGTCGTCAGCTCTACCAGGCGTTGCGTACCC GGGTGCTCGATGGGCGCCTGGCCAGCGGCACGCGCCTGCCGGCCAGCCGTGACCTGGCGGCGGCCTTGTCGATTTCGCGCAACAGCGTGGTGCGGGCCTA TGACCAGCTCTACGCCGAGGGTTTCATCGAAGGGCGAGTTGGTGACGGCACTTATGTGGCAAAACTGTCCTCGACGACGTTGCCGCTGAAAAACATATCC ACAAAAGTATCCACAGGGTTTTCAACAGGCTTACCCACAGCCTTATCCACAGACTGGCTCGATTTACCTGTGGGTCCATCCAGTAAAGTTATCCACAGCG ACGCGCTGAACCGCGTCGAAAAACACCATTTGGCCCAGCCGCCCAGTGGCCCGCCGCGGGCGTTTCGGGTCGGTGTACCGGCTTTCGATCTGTTCCCTTT CGACGTCTGGGCCAAGCTGAATGCGGCTTTCTGGCGCAAGCCGGATCTGCAGCAGCTGTGTTATGGCGATCCCCAGGGCGATGCGCGCTTGCGCGGGTTG ATCGCGGCGTACTTGCGCAGCTCACGAGGGCTGCACTGCACGGCTGAACAAATTGTGATCACCAGTGGCGCACAGCAGGGCATCAGCCTTTGTGCACAGC TGTTGGTCGACCCGGGCGACGTCGTGGCGGTGGAAAATCCCGGCTATCGCGCGGCCGGGCATGCGTTCGCCGTTGCCGGGGCCGAGGTCAGAGGCGTGCC GGTGGATGGCGATGGCTTGGATTGCGCCGCGCTGGGGGCGTTGAGCCACTGTCGGCTGGCCTACGTCACTCCGTCCCATCAATACCCGACCGGGGTGGTC ATGAGTCTGCCACGGCGGCTGGAACTGCTGGCCTGGGCCGAGCGCAACGACGGCTGGATCGTCGAGGATGACTACGATGGCGAGTACCGCTACAGCGGCG CGCCACTGGCACCCTTGGCTGCATTGGATCGCCAGGGGCGGGTGCTTTACGTCGGCACGTTCGGCAAAGTGGCGTTCCCGGCCCTGCGCCTGGGTTACCT GGTGCTGCCGCCTGGCCTGGTCAACGCCTTCGCCCGACGGCGCGCCGTGGACGTGCGCCACTCCGAAGTCAGCACCCAGGCGGTGATGGCCGAGTTCATG GCCGCCGGGCATTTCCAGCGGCATATCCGGCGTATGCGCAGGGCCGCCCTGGTTCGGCGCGATGCGTTGCTGGCGGGCTGGCCCAAGGCCGTTGCGGGTG TCGGAGCCCTGCCCACCGTCGTGGCCGGGCTGCATCTCACGGTCCCGGTAGAGAGCATCGAGCGCGAGCGCGAACTGATCGCCCAAGCGACGAATGTGGG TGTGGAAATCAATGGCCTGAGCAGCTATTGGTTGCCCACCACGCCGTCGCAGGTGCGTGCCGGGCTGGTGCTGGGGTTTGCGGCGGTCCCGCCAGCGGCG ATTGGCACCGCGCTGGCGAACCTGTCGAAGGCCTGGAAACCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGCGCGCCGCCGGGGCATTGGCGGCGGCCCTGGCTTTATGGTCGCTCCTTTGGAAAAAACACCTGCTGGGCCTGGTCAATGGCAATTTCGCTGCGGTAA TGATTGATCAACTGACGCTGGCTAAAGCCTTTTGTAGAAACGTCGGCTATCCCCAGAACCACCTGCTCCACTGTTTTCAGGCGTGCCGAAAGGAACGTAC GGGCAGGCACCCAGTTCGTGGAGTAGTGAAAGTCGGCGAACCAGAGCGTCTTGTTGGTCTTCTTGTCCTTGATTTCATACCTGTCGAGGAAACCATGCAT GGGGCCCTTGATGCGTTGTCGGTTGATCCGTTCGGTGATGGAAATCCGGTTTCGATCTTTCAGCCAGATCACGCCACTCATGGTGGGTGGGCTTTGTTTG ATGATGTTCAGTACGGTTTCGAACTCCTGCTCATAGAGCGACTTCGATTCTCTCTTGAGGCGCAATCGCAAGGATTCGGCCGAGCGCTGCTGCGCCTCTG
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| Amino Acid Sequence |
>transcriptional regulator, GntR family domain / Aspartate aminotransferase
MHNAAPPLSFNPAGIELDRRQGLSRQLYQALRTRVLDGRLASGTRLPASRDLAAALSISRNSVVRAYDQLYAEGFIEGRVGDGTYVAKLSSTTLPLKNIS TKVSTGFSTGLPTALSTDWLDLPVGPSSKVIHSDALNRVEKHHLAQPPSGPPRAFRVGVPAFDLFPFDVWAKLNAAFWRKPDLQQLCYGDPQGDARLRGL IAAYLRSSRGLHCTAEQIVITSGAQQGISLCAQLLVDPGDVVAVENPGYRAAGHAFAVAGAEVRGVPVDGDGLDCAALGALSHCRLAYVTPSHQYPTGVV MSLPRRLELLAWAERNDGWIVEDDYDGEYRYSGAPLAPLAALDRQGRVLYVGTFGKVAFPALRLGYLVLPPGLVNAFARRRAVDVRHSEVSTQAVMAEFM AAGHFQRHIRRMRRAALVRRDALLAGWPKAVAGVGALPTVVAGLHLTVPVESIERERELIAQATNVGVEINGLSSYWLPTTPSQVRAGLVLGFAAVPPAA IGTALANLSKAWKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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