Pseudomonas fluorescens F113, PSF113_5772 (spoT)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTGGGCTGAACAGCCCTTCCCAAAACCGCTGCGACGGCTTTACATTGGTAGTCGCAGCGCGCCGAGGGGTTTGGTTAAAAAATCAGCGCTTCCCTAAACG CTGGTGTTTTTTTAAACTGTCGAGTCCGCTCGCCCAACCGGGCAGCGCGCATATTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGAACACGTGGAAAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACCGGTGGCAAAGAGCCGTTGGTCCAGTGGG AAAACGACAAGCCTACCGTAGTAGCGCTGCGTGAAATCGCCGAAGGCCTGATGAGCTACGAGTTCATCGCCAACGCTGAAATCGTCGAAGACGAACCGCT GTTCGCAGCGTTCGAGGACGAGTCCAACGAGGCGGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGGTCACAGCAAACGGCAGGAGTCATCATC
|
|
| DNA Sequence for Gene |
>PSF113_5772
|spoT
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGGCCTACCTCGGCACGGACCAGGTCAATCTGGTCCGCCGAGCCTATTTCTACGCCGAACAAGCCC ACGACGGCCAACGCCGCCGCAGCGGCGAGGCGTACGTCACGCACCCGCTTGCGGTGGCGAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCGGCGATGCTGCATGACGTGATCGAAGACACCGGCATTGCCAAGGAAGCGCTGCAAGCGCAGTTCGGCGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAGGCCGAGGCCCAGGCCGAAAACTTCCAGAAAATGGCCATGGCCATGGCCCGCGACATTCGCGTGATCC TGGTCAAGCTCGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCCGGCGAAAAACGCCGGCGCATCGCCAAGGAAACCCTGGAAATCTACGC ACCCATTGCCAATCGCCTGGGCATGCACGCGATCCGCATCGAGTTCGAAGACCTCGGCTTCAAGGCCATGCACCCGATGCGTTCGGCGCGGATCAACCAG GCCGTCAAGCGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAGTCCCTGAGCCACTGCCTGGCCATCGACGGCATCGAAGGCGAAGTCA GCGGGCGGCAGAAACACCTCTACGGCATCTACAAGAAAATGCGCGGCAAGCGTCGGGCCTTCAACGAGATCATGGACGTCTATGCGTTCCGGATCATCGT CGACAAGGTCGATACCTGCTACCGCGTGCTGGGTGCTGTACATAATTTGTACAAACCGTTGCCGGGGCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTACCAGTCGCTGCACACCACGTTGTTCGGCATGCACGGCGTACCGATCGAGATCCAGATCCGCACCCGCGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCCCATTGGCTGTACAAATCCAGCGGCGACGAACAGCCCAAGAGCACCCACGCCCGCGCCCGGCAATGGGTCAAGGGCGTGCTGGAAATGCA GCAGCGTGCCGGCAACTCCCTGGAATTCATTGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTCTTCACGCCCAAGGGCCGGATCATGGAG CTGCCCAAAGGCTCCACGGCCGTGGACTTTGCCTACGCGGTGCACACCGACGTCGGCAACAGTTGCATCGCCTGCCGGATCAACCGCCGCCTGGCACCGT TGTCCGAACCACTGCAAAGCGGTTCCACGGTGGAGATCGTCAGCGCCCCCGGCGCACGACCCAACCCGGCGTGGCTCAATTTCGTGGTCACCGGCAAGGC CCGCACCCATATTCGTCACGCCCTGAAGCTGCAACGCCGCTCCGAATCCATCAGCCTCGGCGAACGCCTGCTGAACAAGGTGCTGAACGGTTTCGACAGC TCTCTGGACAAGATCCCGGTCGAGCGCGTGCAACTGATGCTCCACGAATACCGTCTCGAATTGATCGAAGACCTGCTCGAAGACATCGGCCTGGGCAATC GCATGGCCTACGTCGTCGCCCGCCGCCTGCTCGGCGAAGGCGAACAGTTGCCAAGCCCCGAAGGCCCGCTGGCGATTCGTGGCACCGAAGGCCTGGTGCT CAGTTATGCCAAGTGCTGTACGCCGATCCCGGGCGACCCGATTGTCGGCCATTTGTCCGCCGGCAAAGGGATGGTGGTGCACCTGGACAACTGCCGCAAC ATCAGCGAAATCCGGCACAACCCGGAAAAATGCATCCAGCTCTCCTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAGCTGCGGGTCGAGCTGGAAC ACCAGCGCGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAATGCCGCCGACGGCAATATCGAAAAAATCAGCATGGACGAACGCGATGGCCGCATCAGCGT CGTTCAATTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCCTGACCGGGGTTATCCGCATCACCCGGATGCGC GCGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCATTCGTTATCAGGAGTCATTCATGACCAAGACCGTCATCACCAGCGACAAGGCCCCGGCCGCCATCGGTACTTATTCCCAGGCGATCAAGGCCGGCA ACACCGTGTACATGTCGGGCCAGATCCCACTGGACCCGAAAACCATGGAGCTGGTGGAAGGCTTCGAAGCCCAGACCGTACAGGTGTTCGAAAACCTCAA GGCCGTGGCCGAGGCTGCCGGTGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCATG GGCAAGTACTTCGACCAGCCTTACCCTGCCCGCGCCGCCATCGGCGTAGCAGCCCTCCCCAAGGGCGCTCAGGTTGAGATGGATGCCATCCTGGTCATCG AGTAATAAGGTCGGCGCAGCCTCCCCCGCTGCGCCGTTTTCGTCTTGAAAGGATTCCACCATGCGCAAAGCGCTTGCTCTCTCGCTGGCAACCCTGCTTC
|
|
| Amino Acid Sequence |
>protein SpoT
MPSIDALADRLSAYLGTDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARINQ AVKRARGNRKEIVNKIEESLSHCLAIDGIEGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKSTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS SLDKIPVERVQLMLHEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|