Pseudomonas fluorescens F113, PSF113_5684 (ppx)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACCTCGGCCCTGGACCCGGAACTGGTCAACGAAGTGCTCAGCGTGGTGCGGCAGTTGGCCAAGGAAGGCATGACGCTGATCATGGTCACCCATGAAATGC GTTTTGCCCGGGAAGTCGGCGACAAGCTGGTGTTCATGCACCAGGGCAAGGTGCATGAAGTGGGCGATCCCAAGGTGTTGTTCGCCGATCCGCAGACGGC GGAGTTGGCGAACTTTATCGGGATGGTCGAGCCCGCCTGATTTTCTCAGCCAAGGAACACTCTGTGGCGAGGGGATTTATCCCCGTTGGGCTGCGGAGCG GTACCCAAACCAGGCAACTCGGCGTGCCAGGATGATTGAGTTCACAGCTTTAGGGCTGCTACGCAGCCCAGCGGGGATAAATCCCCTCGCCACAAGGGCA CCCTGCAAGCTGCTCTGGCTCAAGGGTTTGGTTCAGGCGCGTTGGCGTAAGCGGTCGATCGTGGCAGGATGGCGAGGTTATCGACCGAGACTTTTTGACC
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| DNA Sequence for Gene |
>PSF113_5684
|ppx
ATGCCGCCATCCCAAGCCAAGAATCTGTCCCTGATCGCTGCCATCGACCTGGGCTCCAACAGCTTCCACATGGTCGTCGCCAAGGCCCAGAACGGGGAAA TCCGCATTCTTGAGCGGCTCGGCGAGAAGGTTCAACTGGCCGCGGGTATCGATGAAGAGCGCAAGCTCAGCGAAGAATCGATGCAGCGCGGGCTTGATTG CCTGAAACGTTTCGCCCAACTGATCAACGGCATGCCCCTGGGAGCTGTGCGGATCGTGGGCACCAACGCCCTGCGCGAGGCGCGCAACCGTGGCGAGTTC ATCCGCCGCGCCGAAGAAATCCTCGGGCATCCGGTGGAAGTCATTTCCGGCCGTGAAGAAGCACGCCTGATCTATCTGGGCGTCTCCCACACCTTGGCCG ACACGCCGGGCAAGCGCCTGGTGGCAGACATCGGCGGCGGCAGTACCGAATTCATTATTGGCCAGCGTTTCGAACCGCTGCTGCGCGAAAGCTTGCAGAT GGGCTGCGTCAGCTACACCCAGCGTTATTTCCGCGACGGCAAGATCACCCCGGCCCGCTATGCCCAGGCCTACACGGCGGCGCGCCTGGAAATCATGAGC ATCGAACACGCCCTGCACCGCCTGACCTGGGACGAAGCCATCGGCTCCTCGGGGACCATTCGTGCCATCGGCCTGGCCCTCAAGGCCGGCGGCCACGGCA CCGGTGAGGTCAACGCCGAGGGCCTGGCCTGGCTCAAGCGCAGGGTGTTCAAGCTCGGCGAAGCGGACAAGATCGACTTCGAAGGCATCAAGCCCGACCG CCGGGCGATTTTCCCCGCGGGCCTGGCGATCCTCGAAGCGATTTTCGACGCCCTCGAATTGCAACGCATGGACCACTGTGAAGGCGCCCTGCGCGAAGGC GTGCTCTACGACCTGCTGGGGCGTCATCATCACGAAGACGTGCGCGAGCGCACCCTGGGCTCGCTCATGGAGCGTTATCACGTCGACCTGGAACAAGCCG TACGGGTCGAGCGCAAGGCACTGCACGCCTTCGACCAGGTGGCCGATGACTGGGACTTGAACGACGGGGTGTGGCGCGAGTTGCTGGGCTGGGCCGCCAA GGTCCATGAAGTGGGCCTGGACATCGCCCACTATCACTACCACAAGCATGGCGCCTACCTGATCGAGCATTCGGACCTGGCGGGTTTTTCCCGGGAAGAT CAGCAAATGCTCGCGCTGTTGGTACGCGGCCATCGACGCAACATTCCCAAGGATAAATTTGCCGAGTTCGGCGATGACGGCATCAAGCTGATTCGCCTGT GCGTGTTGCTGCGCTTTGCGATCCTGTTCCATCACATCCGTGGCACCCAGGAAATGCCCCAGGTGGCCTTGCACGCCGACGGCGATCAACTGGACGTGAT GTTCCCCGAAGGCTGGCTGGAAGAGAACCAATTGACCCAAGCCGACTTCGCCCAGGAAGCGGAATGGCTGACCCGGGTCGGGATTGTGTTGAACATTCAC TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTATCGACTGCAACGCAGATCTCTTGTGGCGAGGGGATTTATCCCCGCTGGGCTGCGTAGCAGCCCTAAAACCTGCCTACCCGTTTTGTCGGGCTGATTG CCTTCAACTCTTTGGGGCCGCTGCGCGGCCCAACGGGGATAAATCCCCTCGCCACAAAAGCTAAGCCTGCCCCCCAACCTTCGAGCGTTTAACGAACCGC CAACACCGGGCTGCTCAAGCGCTCGAGCAACGTCGCCTGGGCGCTGCGCGGGTTCTGGTTGCCGGTCGGTGTGTTGCGGATGTAACGGCCATCCGACTGC AAGCTCCAGCTGTGGGTGTTGTCGGTAAGGTAGCTTTCCAGCTCTTTCTTGACCCGCAGGATCAGCTTCTTGCCTTCCACCGGGAAGCAGGTCTCGACCC GCTTGTCGAGGTTGCGCTCCATCCAGTCGGCGCTGGACAGGAACATCTGCTCCTCACCGCCGTTGAGGAAGTAGAACACCCGCGTGTGTTCCAGGAAGCG
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| Amino Acid Sequence |
>protein Ppx
MPPSQAKNLSLIAAIDLGSNSFHMVVAKAQNGEIRILERLGEKVQLAAGIDEERKLSEESMQRGLDCLKRFAQLINGMPLGAVRIVGTNALREARNRGEF IRRAEEILGHPVEVISGREEARLIYLGVSHTLADTPGKRLVADIGGGSTEFIIGQRFEPLLRESLQMGCVSYTQRYFRDGKITPARYAQAYTAARLEIMS IEHALHRLTWDEAIGSSGTIRAIGLALKAGGHGTGEVNAEGLAWLKRRVFKLGEADKIDFEGIKPDRRAIFPAGLAILEAIFDALELQRMDHCEGALREG VLYDLLGRHHHEDVRERTLGSLMERYHVDLEQAVRVERKALHAFDQVADDWDLNDGVWRELLGWAAKVHEVGLDIAHYHYHKHGAYLIEHSDLAGFSRED QQMLALLVRGHRRNIPKDKFAEFGDDGIKLIRLCVLLRFAILFHHIRGTQEMPQVALHADGDQLDVMFPEGWLEENQLTQADFAQEAEWLTRVGIVLNIH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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