Pseudomonas fluorescens F113, PSF113_5250 (oprG)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGGTCGCACCACGGACTTCTTGCTGGTGCCGTATTTCGGCGCCTGCATCCACGTACCGCCACCGCCATCGAACCAGATCGTGCATGTGAAAAGTGAAG TCGGGGTCAAGCTCGATGAGCTGTACCAGCCGTACTGGGTCGAAGGGCCGATGCAGGTCAAGCCGTCCACCAGTGAACTGGCCGATGCCGGGTATCAGAT GGAGGCCGAGAAGATTTATGTGTATGAGCTGCCGGAGTGAAGCGGGTAGTGATGTGTTGTTTGTAAGATAGCCATCGCGAGCAAGCTCGCTCCCACAGTT GATCGTGTTTCTTCAGAACGAATGCGGTCGAATAATGTGGGAGCGAGCTTGCTCGCGATGGTTCCCTCGAATTTTCCCATCAGCGTTTTTATTGAGCTGA GTCAATTAAACACCCCCTGACTCATTGAGCTGTGTCAAAAGACCGGAGCAGACGGCTTCGTACCATGAGACATCAAATTTCGATGCCCTTTGGAGCCCTC
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| DNA Sequence for Gene |
>PSF113_5250
|oprG
ATGAACAAGTCCTTGCTCAGCGCTTCCCTCGTTGCCCTCGCGCTCGCTGCCCCACTCGCCCAAGCCCACACAGCCGGCGACATCATCGTTCGCGCCGGTG CTATCACCGTCAACCCGGAAGCCGATAGCTCCAGCGTCAAGGTCGACCGTGGCCCGCTGGCCGGTGCCGACCTGGGCGGCAAGGCGACCATGAGCAGCGA CACGCAGTTGGGCTTGAACTTCGCCTACATGATCACCAACAACCTGGGGATCGAACTGCTGGCGGCCTCGCCGTTCGAGCACGACGTGAAACTCAAAGGC ACCGCCCTGGGCGCGGCCAACAACAAGCTCGGCACCCTCAAGCACCTGCCGCCGACCCTGAGCCTGGTCTACTACCCACTCGACGCCAAGTCGACATTCC AACCTTATGTCGGCGCCGGCATCAACTACACCTGGATCTACGACGAACACGTCGGCAGCGAAGCCAGCGCCAACGGCTTCAGCAACTTTCGCGCAAGCAA CAGCTGGGGCATGGCGTGGCAAGTGGGCGCTGACTACATGTTGACCGACAACGTCATGATCAACGGCCAGATTCGCTACATCGACATCGACACCACCGCG TATGTGGACAACAACGCCGTGGCTGGTGGCACCCGGGCCAAAGTGAATGTCGATGTGGACCCATGGATCTACATGGTGGGGTTGGGCTACAAGTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCGAACCTGAAGATACAAAAATCCCTGTGGGAGCGAGCTTGCTCGCGATGACGGTGGATCAGCCAGCGATGATGTTGGCTGACCTACCGTCATCGCGAG CAAGCTCGCTCCCACAGGTTTGTGGCGGCTGAAAATCAGCGCCCCAACAACCGCGCCAGCCCCACGCTCATCGGGGTTTGTGGTGGAAAGCTGAAGCGCT GCAGCAACCGATGGTTATCCGCCCGTGAATGACGGATGTCGCCGGAGCGCGCCGGGCCGTAGCTGATCGGCGGCAGATCGCCCACCACGGCGGCCAGGGC CTGGAGCATCTGCTTGAGGGTCGTGGCCTGATTCCAGCCGACGTTCACCGCACCCACTTCCACCTCAGGCTTTTCGATGGCCTGCACCAGCAAATCCACC AAATCTTCGACGTAGACAAAATCCCGAGTCTGCTCGCCGTCGCCAAACACGGTGATCGGCAGGCCTTTCTGCGCCCGTTCGCTGAAAATGCTGATGACCC
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| Amino Acid Sequence |
>protein OprG
MNKSLLSASLVALALAAPLAQAHTAGDIIVRAGAITVNPEADSSSVKVDRGPLAGADLGGKATMSSDTQLGLNFAYMITNNLGIELLAASPFEHDVKLKG TALGAANNKLGTLKHLPPTLSLVYYPLDAKSTFQPYVGAGINYTWIYDEHVGSEASANGFSNFRASNSWGMAWQVGADYMLTDNVMINGQIRYIDIDTTA YVDNNAVAGGTRAKVNVDVDPWIYMVGLGYKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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