Pseudomonas fluorescens F113, PSF113_4741 (rhlB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCACAACGGGTCATCGACCTGATCGAAACCCAGCGAGCCAGCGGAATAGACGCCTCGCGGATTTTCCTGGCGGGTTTCTCCCAAGGCGGCGCGGTGGTCT ATCACACGGCATTCGTGAAATGGCAGGGCCCGCTGGGCGGCGTGGTCGCGTTGTCTACTTATGCACCGACTTTCAGCGATGAGCTGCAATTGTCGGCCAG CCAGCAACGCATTCCGGTGCTGGCGCTGCACGGGCAATACGACGAAGTGGTACTCAACCCCATGGGCCGGACCGCGAAAGAGTATTTAAAGCAGCATGGT GTCACCGTGACATGGCAAGAATACCCAATGGGTCACGAAGTGTTACCCGAGGAGATTCGCGACATCGGCACCTGGCTGGCCGAGCGGTTGCGCTAAGAGG CTGATCGCCACGCCGGTCCTTTGACGATCACACTACGCCGCGCCCGTTTCTTGCATTACACTGGCCGGCGTACATTCCTTAACCAATCGATGAGATGACC
|
|
| DNA Sequence for Gene |
>PSF113_4741
|rhlB
GTGCTCAAAGCACTCAAGAAGATGTTCGGTAAAAGCGAGGCCGAGCAACTCGCGCCTGGCTCCACAGCGCCGACCCACGGCCCGAGCCATACCGATGCGC AACAACCGCGCCGGGCGGCACCTGTTGCACAGGCAACAAAAGAACCCGTCGCCCAGCCTGTTACGGCCCCCGCGCCCGAGAAACCACGCAACGAAGCCCC CAAGCCACGCCGCGAGCGCGCACCGAAACCGCCGGTCGTCGCCTGGAAGCTCGAGGACTTCGTCGTAGCCCCCCAGGAAGGCAAGACCCGCTTCCACGAC TTCAAGCTCGCCCCGGAACTGATGCATGCCATCCAGGACCTGGGTTTCCCGTATTGCACGCCAATCCAGGCGCAGGTGCTGGGCTTCACCCTCGCGGGCA AAGACGCCATCGGTCGCGCCCAGACCGGCACCGGCAAGACCGCCGCATTTCTGATCTCCATCATCACCCAGTTGCTCCAGACCCCGCCGCCCAAGGAACG TTACATGGGCGAGCCACGGGCGCTGATCATCGCGCCGACCCGCGAGCTGGTGGTACAGATCGCCAAGGATGCCGCCGACCTGACCAAGTACACCGGCCTG AACGTCATGACGTTCGTGGGCGGCATGGACTTCGACAAGCAGCTCAAGCACCTCGAGGCCCGCCACTGCGACATCCTGGTCGCCACCCCGGGCCGCCTGC TGGACTTCAACCAGCGCGGCGACGTGCACCTGGACATGGTCGAAGTGATGGTGCTGGACGAAGCCGACCGCATGCTCGACATGGGCTTCATCCCGCAAGT GCGCCAGATCATTCGCCAGACCCCACCGAAAAGCGAACGCCAGACCCTGCTGTTCTCTGCCACCTTCACCGAAGACGTGATGAACCTGGCCAAGCAATGG ACCACCGATCCGTCCATCGTCGAGATCGAAGCCGAGAACGTCGCCAGCGAAAACGTCGAGCAGCACATCTATGCCGTGGCCGGTGCCGACAAGTACAAGC TGCTCTACAACCTGGTCAACGACAACGGTTGGGAACGGGTGATGGTGTTCGCCAACCGCAAGGATGAAGTGCGGCGTATCGAAGAACGCCTGGTGCGCGA TGGCGTCAACGCGGCCCAGCTCTCGGGCGACGTGCCCCAGCACAAGCGCATCAAGACCCTCGAAGGTTTCCGTGAAGGCAAGATCCGCGTACTGGTCGCC ACCGACGTAGCCGGTCGCGGTATCCACATCGACGGCATCAGCCATGTGATCAACTTCACGTTGCCGGAAGTACCGGACGACTACGTGCACCGTATTGGCC GTACCGGTCGTGCCGGGGCCGCGGGGGTTTCCATCAGCTTCGCCGGGGAGGACGACTCCTATCAATTGCCGTCCATCGAGGCGTTGCTGGGGAAAAAGAT CAATTGCGAAACTCCGCCGACGCATCTGTTGCGACCGGTCGAGCGCAAGCGCCCTTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CATAGAGACGGACGCAGAGCGTCCATTGAGGCATTCCCACGCAGAGCGTGGGAACGATCAGCGCAGCCAAGACAGGCTGCGCTTTTTTTTGTCTTGGATA TTGCTCGATTAAACTAAAAGTCCATAATAGACAAATTAGTTTACAGGCAGCTTCCCGGAGCCCCTATGTCCAGCACGCCCTATGTGATGACCCAAGCCCA GGCCCGAGAACTGCTCGGGCAAATCGACGTGCCGCAAATCCTGCGCAAACTGTTCCGCGATCTCGCCGTCGGGCAAGCGGTGCAGCCGCCTCAGCAACTG GTGGTGTTTCCCCAGGGCGCCGGGGACTTCATCAACTACCTGGGTGTGCTGGCTGAAGACCAGGTCTACGGGGTAAAGACCTCGCCCTATATCGTGAGCG AGCAAGGCGCGCTGGTGACCGCCTGGACCTTGCTGATGTCGATGCAGACCGGCCAGCCGCTGCTGTTGTGCGATGCCGCCGAGTTGACTACCGCCCGCAC
|
|
| Amino Acid Sequence |
>protein RhlB
MLKALKKMFGKSEAEQLAPGSTAPTHGPSHTDAQQPRRAAPVAQATKEPVAQPVTAPAPEKPRNEAPKPRRERAPKPPVVAWKLEDFVVAPQEGKTRFHD FKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGL NVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNLAKQW TTDPSIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVA TDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIEALLGKKINCETPPTHLLRPVERKRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|