Pseudomonas fluorescens F113, PSF113_4037
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGACGCGCCTTGAGCCAGGCTTCAACGGCAGCGCGCTGCTCTTCGGAAACCGAGCCACGCTTCTGCAGGCAAACCAGACCGTAGTCGTCGCCGCCGACGT AGCCCAGGCCGTTGGCTTCCATGGCTTCTTTCAGGAAAGCGTCGAGGAAAGCGTCAATAGCCTCATCGGCCAGATCTTCTTTGAAATCCAGGTTCAGTTC GAAACCCAGCTCTTGAAATTCATCCACGCACAGTTTTTTGCGCAGACGCTGGGAACGGTTAGTCGCCATTGGAACAATCCTCATAAGTAATAACGGCCGG CACTTTACCAGTTTGGTGCGGCGATTGCCCGACTGATCGGGCGTATCGACCTACCGTCGGTAAAAAATAGCAGCCGAAGGGCTCAGGCACGGCCCCAGCC GTTGCGGCTTGGGGCATAATGCCGACACTTTCATGACCGTTGAGGGCGTTCATTTTCATGCCCTCGTCTTTTCCCCCTCGCCCGTAGGGTTTTATTTCAA
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| DNA Sequence for Gene |
>PSF113_4037
ATGATCAAATCTTTGCGTCCACTGCTTCTGGCCAGCCTTCTTCTTCCCCTGGCCCTCCCTGTCACCACCTACGCCGCCACCATCAACACCGCCCTGTCGC CCAACGTGCAAAAGGCGCTCAAGAACAGCAAGCTGCAGAACGACGCGCTGTCCCTGGTGATGGTGCCACTCAACGGCCCCGGCACTCCTACCCTGTACAA CGCCGACGTCTCGGTGAACCCGGCGTCCACCATGAAGCTGGTGACCACCTACGCGGCCCTGGAAATGCTCGGCCCCAATCACCAGTGGAAAACCGAGTTC TACACCGACGGCACTCTCAACGGCGGGATCCTCAACGGCAACCTGTACCTCAAGGGCGGCGGCGATCCCAAGCTGAACATGGAAAAACTCTGGCTGCTGA TGCGCGATCTGCGGGCAAACGGCGTGCAGCAGGTCACCGGCGACCTGGTGCTGGACCGTGGATTCTTCATCCAGCCGCAACTGCCCGAGTTCAACGACGA CGGCAACGACGAAAACAAACCATTCCTGGTCAAGCCCGACTCGCTGCTGGTCAACCTCAAGGCCCTGCGCTTCGTTGCCCGCAATGACGGCGGCCGGGTG CTGGTGTCGGTGGAGCCGCCGATCGCCAGCATTCGCATCGAAAACCAGGTCAAGGCCGTCAATTCCAAGCAATGCGCCGGCGGCGTGCGCTACAACCCGG TACCGCAAGCAGACGGCAGCGTGACAGTGACCGTCGGCGGCCAGCTCGGGGACGGCTGCAGCTCCCAGACTTACCTGTCGCTGCTGGATCACGCCACCTA CACCGCCGGTGCGGTGCGGGCGATCTGGAAAGAGCTGGGCGGCAGCATCCAGGGCAAGGACCGCCTGGCAGCGACCCCGAGCAGCGCCAAGGTGCTGGCC CGGGCGTTCTCCCCGGACTTGGCGGAGATCATCCGCGACATCAACAAATACAGTAACAACACCATGGCCCAGCAACTGTTCCTGAGCCTCGGCGCGCAGT TCCGTAACGAAGCCGACGGTGATGACGCCAAGGCGGCGCAGCGGGTGGTGCGCCAGTGGCTGGCCAAGAAAGGCATCACCGCGCCGCACCTGGTGATGGA GAATGGTTCCGGTCTGTCCCGCGCCGAACGGGTCAGTGCCCGGGAAATGGCGGCCATGCTGCAGGCCGCCTGGCGCAGCCCGTACTCGGCCGAGTTCATC AGTTCGATGCCGATTGCCGGCACCGACGGCACCATGCGCAAACGCCTGAAGACCACCGCGATGGCCGGCGAAGCCCACGTCAAGACCGGGACCCTGAACA CCGTCCGCGCCATCGCCGGCTACAGCCGTGACATCAATGGCAATACCTGGGCGGTGGTAGCGATTCTCAACGATCCAAAACCATGGGGCGCCTCGTCGGT GCTGGACCAGGTGCTGCTGGACCTGTATCGCCAGCCGAAACTGCCGCAGACGGCTTCGGTGCTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACAGCACAAACCCAATGTGGGAGCGAGCCTGCTCGCGATTCGGTAGGTCAGCAGACATCGATGCTGAATGACATATCGCTATCGCGAGCAAGCTCGCTC CCACACTTGATCTGCCGCGGGCACAAAATTCGTGTACGAAGCCGACCCACTGTGGGAGCGAGCTTGCTCGCGATAGCGGTATGTCATTCAGCCTATTCAT CAACTGAACCATCGATATCGCGATGATATGTGGCTAGCCCAACTGCACCTCAACCCGATCCCGCCCGGCCTGCTTGGCCGCATACACGCCCGAGTCAGCC CTTAGCAGCAACGCATCGGCGCCCTCCCCGGCGCGCCAGGTAGCGATACCGAAGCTGGCGGTGACAAACCCCACATCCTCGATGGGCGCCGCCCGCAAGC CTTCCCACAGCTCCAATGCCAAGGTGTAGGCACTTTCGCTGTCGGTGTCCGGGCACAGCACGACGAACTCTTCCCCACCCAGCCGGCAAAACACATCGGT
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| Amino Acid Sequence |
>d-alanyl-d-alanine carboxypeptidase d-alanyl-d-alanine-endopeptidase
MIKSLRPLLLASLLLPLALPVTTYAATINTALSPNVQKALKNSKLQNDALSLVMVPLNGPGTPTLYNADVSVNPASTMKLVTTYAALEMLGPNHQWKTEF YTDGTLNGGILNGNLYLKGGGDPKLNMEKLWLLMRDLRANGVQQVTGDLVLDRGFFIQPQLPEFNDDGNDENKPFLVKPDSLLVNLKALRFVARNDGGRV LVSVEPPIASIRIENQVKAVNSKQCAGGVRYNPVPQADGSVTVTVGGQLGDGCSSQTYLSLLDHATYTAGAVRAIWKELGGSIQGKDRLAATPSSAKVLA RAFSPDLAEIIRDINKYSNNTMAQQLFLSLGAQFRNEADGDDAKAAQRVVRQWLAKKGITAPHLVMENGSGLSRAERVSAREMAAMLQAAWRSPYSAEFI SSMPIAGTDGTMRKRLKTTAMAGEAHVKTGTLNTVRAIAGYSRDINGNTWAVVAILNDPKPWGASSVLDQVLLDLYRQPKLPQTASVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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