Pseudomonas fluorescens F113, PSF113_3754 (nirS)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCCACCCTCGCGCACGGCCCGGGTCAACGGGCCGTCCTGCCACCAAGTGCCCTGGGCGCCGATCAGGTGACGGCCCACCAGGTCGGCCGCGCTCAAGT CATCGTGACAGGCGACGGTGTACAGCGGCAGCTTCAGGCGGTGGGCCATGTGTTGGACGAAACGGGTCTTGCCGCAGCCGGTCGGGCCTTTGATCAGCAC CGGCATGCCGTGATGCCAGGCCTGTTCGAACATCGCCTGCTCGTTGTCCTGGGGTTGATAAAAGGGTTCGTCGGGGTGCTGCAAAGTGTGGATAGCGTTC ATGGCAAGGCCTGATCAGACAACACGATTGCAGGCCACGCTACGGTGCCCTGCGACAACCTGGCAAGGGCTGCGGCCGGCAAACTTGATCGCCGTCAAGC GGCTAACCACCGCCTCGGGCATAGCCTTGCACCGCACCAAGAACCTGCGCGCCGAACGTCAATTACAGCGCAGCGCGGGTCACGCCTGAGGAGAAATGGA
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| DNA Sequence for Gene |
>PSF113_3754
|nirS
ATGCTGATCAGCCACAAAAAATCGTGGGCCCTTCGGGTCACGGCGCTGTGTACAGCGCTGGCCGCCCCCCACGCCTTCGCCGACCAAACCGCTGCGCCGG AACAACCCCGCGTGGTCAAGACTGAAGGCGCGCCCGACCTGAGCCAGGCCGACTTCGATTCGGCCAAGGAAATCTACTTCCAGCGCTGCGCCGGTTGCCA CGGTGTGCTTCGCAAAGGCGCCACCGGCAAGCCGCTGACACCCGACATCACCCAATCCCGCGGCCAGGCCTACCTGGAGGCGCTGATCACCTACGGCTCG GCCGCCGGCATGCCGAACTGGGGCACGTCCAATGCCCTGACCAAAGACCAGATCACGGTGATGGCCAAGTTCATCCAGCACACCCCACCGACCCCGCCGG AATGGGGCATGGCCGAAACCCGCAAGACCTGGAAAGTGCTGGTCAAACCCGAAGACCGGCCAACCAGGCAACTCAGCACCCTCAACCTGCAGAACCTGTT CTCGGTGACCCTGCGCGACGACGGCAAGATTGCCCTGATCGACGGCGACAGCAAGAAGATCGTCAAGTTGATCGACACCGGTTATGCAGTGCACATCTCG CGCATCTCGGCGTCGGGTCGCTACCTGCTGGTAATCGGCCGGGACGCCAAGATCGACATGATCGACCTATGGCCGAAAGAGCCGACCAAGGTCGCGGAAA TCAAGGTGGGTATCGAAGCCCGCTCGGTGGAAACCTCCAAGTTCAAGGGCTACGAGGACAAGTACACCATCGCCGGCTCGTACTGGCCGCCGCAGTTCAC CATCATGGACGGCGAGACCCTGGAGCCCAAGCAGATCGTCTCGACCCGCGGCATGACCGTCGACACCCAGCAATACCATCCCGAGCCTCGCGTCGCGGCC ATCATCGCGTCCCACGAATGGCCGGAGTTCATCGTCAACGTCAAGGAAACCGGCAAGGTGATGCTGGTCAACTACCAGGACATCAAGAACCTCACCATCA CCAGCATCGACGCCGCACCGTTCCTGCATGACGGCGGTTGGGACAGCAGCCATCGCTACTTCATGACGGCCGCCAACAACTCCAACAAGGTCGCGGTAAT CGACTCCAAGGAACGCAAGCTCACTGCCCTGGTGGACGTTGGCAAGACCCCGCACCCGGGACGCGGCGCCAACTTCAATCACCCCCTCTACGGACCGGTC TGGGCCACCAGCCACTTGGGCGATGCCGGGGTTTCGCTGATCGGTACCGACCCGGTCAAGCACCCGCAATACGCCTGGAAACAGGTCGGCTCGCTCCAGG GCCAAGGTGGCGGCTCGCTGTTCATCAAGACTCATCCTGCGTCTCGCCACCTGTATGTCGACACCACCCTCAGCCCCGACGCCAAGCTCAGCCAGTCGGT AGCGGTGTTCAACATCGACAAGCTCGACGCCGGCTACACCGTGCTGCCGATTGCCGAGTACGCCGGTATCAAGAAAGGCGCGCTGCGTGTGGTGCAACCG GAATACAACAAGGCCGGCGACGAGGTCTGGTTCTCGGTCTGGAGTGGCCAGGAAGATGAGTCGGCGCTGGTGGTGATCGACGACAAGACCCTCAAGGTCA AGAACGTGATCAAGGACAAGCGCCTGATCACCCCGACCGGGAAATTCAACGTCTACAACACCCAACACGACATCTATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCCATCAATAAGAGGAAAAACCATGAAGCCTATTCTGATTGCCTTGGCCTTGACTGCCGCCTACAGCCTGCCGGCGTTGGCACAAGACGGCCCGACGT TGTTCAAGAGCAAGCCCTGCGCGGCCTGCCACTCCATCGACACCAAGGTGGTTGGCCCGGCCCTCAAGGAGGTCGCGGCGAAAAACGCCGGCGTCGCCGG AGCACAGGATTTACTCGCCAAGCACATCAAGGAAGGTACGCAAGGCAACTGGGGACCCATGCCGATGCCGGCCAACCCGGTGACGGAAGAGGAAGCCAAG ATCCTGGCTGCGTGGGTCTTGACCCTTAAATAACGCTAAAGGAGCACATCCCTGTGGCGAGGGGATTTATCCCCGCTGGGCTGCGAAGCAGCCCCAGGAA GGGCAGAACCTATCTGCCTGACACACCGCGATGTCAGGTTTTAGGGCTGCTTCGCACCCCATCGGGGATAAATCCCCTCGCCACAGGGGACGCGCAAAAA
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| Amino Acid Sequence |
>protein NirS
MLISHKKSWALRVTALCTALAAPHAFADQTAAPEQPRVVKTEGAPDLSQADFDSAKEIYFQRCAGCHGVLRKGATGKPLTPDITQSRGQAYLEALITYGS AAGMPNWGTSNALTKDQITVMAKFIQHTPPTPPEWGMAETRKTWKVLVKPEDRPTRQLSTLNLQNLFSVTLRDDGKIALIDGDSKKIVKLIDTGYAVHIS RISASGRYLLVIGRDAKIDMIDLWPKEPTKVAEIKVGIEARSVETSKFKGYEDKYTIAGSYWPPQFTIMDGETLEPKQIVSTRGMTVDTQQYHPEPRVAA IIASHEWPEFIVNVKETGKVMLVNYQDIKNLTITSIDAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKERKLTALVDVGKTPHPGRGANFNHPLYGPV WATSHLGDAGVSLIGTDPVKHPQYAWKQVGSLQGQGGGSLFIKTHPASRHLYVDTTLSPDAKLSQSVAVFNIDKLDAGYTVLPIAEYAGIKKGALRVVQP EYNKAGDEVWFSVWSGQEDESALVVIDDKTLKVKNVIKDKRLITPTGKFNVYNTQHDIY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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