Pseudomonas fluorescens F113, PSF113_3745 (nirE)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCGACAGTGACTTCGTCAGCGGCAACAACGACGCCGACGCGATCCTGCTGCTGCAATGGGTATCCCGGCGCCTGCCCCAACACTACGCCGCACTGGAG CAGATGCTGCGGGCCTGGGGCGGCAATGCCTCGGGCAGCGGCATCGCCAACATCGACAATACCGGCGAGGTTCACCCCGACACGTACTGGTGGCAGCACT CGGTGGGCAATGTCCGCCAGACGCCATTCAAGACACTCTGGCTCGAGCGCCCCGATGCCCTGCTGCTGAAGCTGCGCGAACACCCACGGGCCGTGGGCGG TCGCTGCGGGCAATGCCGCTGGCTGGCGATCTGCAACGGCAATACCCGCACCCGGGCCTGGGCCGACGGCGACCTGTGGGGCCAGGACCCCGGCTGCCAC CTCAGCGACGAAGAAATCGGCTTGCACGCGATCCCCAGCGTTGCGATGCCCTGCGCCTGATCAACCGACGGCGAACCTGATACCGAACCAAGGAAGTCCC
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| DNA Sequence for Gene |
>PSF113_3745
|nirE
ATGCCTGCCTCCATCGTTTTGCCCGCTGCCCTGCAATCGCCCTTCAGATCGGGTGAAGTCGCCCTGGTCGGCGCCGGCCCCGGAGACCCGGGCCTGCTGA CATTGCGCGCCTGGAGCCTGTTGATGCAGGCCGACGCGGTGGTCTACGACCGCTTGATCAGCTCGCAATTGCTCAGCCTGATCCCGCTGACCTGCGCCCG GCACTACGTCGGCAAGGCCGCCGGTTGCCACAGCCTGCCCCAGCCACAGATCAACGAACTGCTGGCCGAGCTGGCCGACCAGGGACAGCGGGTGGTGCGA CTCAAGGGCGGTGATCCGTTCATCTTCGGTCGCGGAGCCGAGGAGCTGGAGTATCTGCTGGCCCGCGGTATCGATTGCCAAGTGGTGCCCGGCATCACCG CCGCAGCCGGTTGCAGCACCTATGCCGGCATTCCCCTGACCCATCGCGACCTGGTCAATTCCTGTCGCTTCATCACCGGTCATTTGCAACGCGAAGGCGA CTTGAACCTGCCCTGGCAAAGCCTGGCGGATGACAGCCAGACCCTGGTGTTCTACATGGGTCTGTCGAACCTCGGCACCATCGCCGCACAACTGATCGCG GCGGGCCTGGCGGCTGATACGCCGGCGGCGCTGATCAGCAACGGCACGCGCCCCGACCAGCAGGTCCTGCGCGGCACCCTCCAGCAATTGCCGCAGATGG CGCTGGCATGCGCCGAGGGCCTGCCAACCTTGACGGTGATCGGCAAGGTGGTTGGCTTGTTTGCCCATCAGGTATTGGAGCATCCGGCCCGCCTGCACCC GGCCCTACCGCTCCAGCCAGGTATCGCGAGGGTGGCCTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAATCGGCTGGCTTACCCCATTGCTGTGGATCGGCGCCGTCCACGGCGCCACGGCGCCTGAACCGGACCTGGCGTTGGCCGAACAGAACTACCAGCAACA CTGCCAGCAATGCCACGGGGTGAATCGCATCGGCGGCGCCGGGCCGGCGCTGTTGCCCCAGAGCCTGAGTCGGATCAAGCCCGACGAAATCCGCCAAGTG ATCGAAAATGGCCGCCCGGCCAGCCAGATGGCGGCGTTCGGTGCGGTGCTGGAGCCTGCGCAGATCGATGGTTTGACCCGCTATCTCCAGCGTCCACCTG CGGTCGAACCGACCTGGAGCGAGGACGACACCCGCCGCAGCCATCGCCTGCTGGCGGATGTCGCCAGCCTGCCCGATAAACCCCAGCACCACGCCGACCC GCTGAACCTGTTCGTGGTGGTGGAGGCTGGCGATCATCACGTCGATATCGTCGACGGCGATCGCTTCGAGGTCCTGGCACGCTTCGCCTCTCATTTCGCG
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| Amino Acid Sequence |
>protein NirE
MPASIVLPAALQSPFRSGEVALVGAGPGDPGLLTLRAWSLLMQADAVVYDRLISSQLLSLIPLTCARHYVGKAAGCHSLPQPQINELLAELADQGQRVVR LKGGDPFIFGRGAEELEYLLARGIDCQVVPGITAAAGCSTYAGIPLTHRDLVNSCRFITGHLQREGDLNLPWQSLADDSQTLVFYMGLSNLGTIAAQLIA AGLAADTPAALISNGTRPDQQVLRGTLQQLPQMALACAEGLPTLTVIGKVVGLFAHQVLEHPARLHPALPLQPGIARVAS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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