Pseudomonas fluorescens F113, PSF113_2722 (oprN)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTTCCTGGTGCTCGCGGCGCAGTACGAAAGCTGGAGCCTGCCATTGGCGGTGATCCTGATCGTACCGATGACCCTGCTGTCGGCGATTACCGGGGTGA TTCTCTCCGGTGGCGACAACAACATCTTTACCCAGATCGGCTTGATCGTACTGGTGGGACTTGCCTGCAAGAACGCGATCCTGATCGTCGAGTTCGCCAA GGATAAACAGCTCGAAGGCATGAACCCGCTGGCGGCGGTCCTCGAAGCGTGCCGCCTGCGTCTGCGGCCGATCCTGATGACCTCCTTCGCCTTCATCATG GGCGTGGTGCCCCTGGTGTTCTCCAGCGGCGCGGGTGCGGAAATGCGCCACGCCATGGGTGTGGCGGTGTTCTCCGGGATGCTCGGCGTGACCTTCTTCG GCCTGCTGCTCACCCCTGTGTTCTATGTACTGATCCGCAACTTCGTCGAGCGCAGCGAGGCCCGCAAAGCGGCCCGGGCTTTGAAACTGGAGGCGCAACA
|
|
| DNA Sequence for Gene |
>PSF113_2722
|oprN
ATGAGTTTGAAAGCGTTCGTGCCGAGCTTGCTGGTGTTGGCCTTGAGTGCCTGTGCCGTGGGTCCGGACTACAAGGCCCCGCAAACGGAGGCGGCGAATA TCACCACCGCCACCGATGGCGCCGCCGGCCAGAAGAACTTCGACCGTGCCCGCTTTGAAGGTATCTGGTGGCAGCAGTTCGACGACCCGACCCTGAACGC GTTGGTGACCCGTTCCCTGGAAGGCAACCGCGAGTTGCGCGTGGCTTTCGCCCGCTTGCGGGCCGCGCGGGCGATTCGCGATGACGCCAGCAATGACGCA ATGCCGACCATCACCAGCCGTGCCAGCAGCAACCTGGGCAAAGGCCAGATCCCGGGGCAGACCACCGACCGGGTCAACACCGAGCGTTACGACCTGGGCC TGGACATGGCCTGGGAGCTGGACTTGTTCGGGCGCATCCAGCGCAACCTGGAAGCCACCGATGCCGATCAACAAGCGATCGAGGCCGATCTCTATCAGTT GCAGGTGACGATGATCGCCGAACTGGTGGATGCCTACGGTCAATTACGCGGCGCCCAACTGCGGGAAAAAATCGCCCTGGCGAACCTCAAGAACCAGCAG GATTCGCGCAAGATCACCGAAAGCCTGCGTGATGCCGGCGTCGGCGATCAGCTCGATGTGGTGCGTGCCGATGCCCGCCTGGCCGCGGTGGAAGCCAGCG TGCCGCAGCTGCAGGCCGAACAGGTGCGCCAACGCAATCGCATCGCCACGTTGCTGGGCGAGCGTCCGGACAAACTCAGTGTGGACCTGAGCCCGAAACA GTTGCCGGCCATCGCCAAGGCCCTGCCCATCGGAGATCCGGGTGAACTGCTGCAACGGCGCCCGGACATTCTCAGCGCCGAACGCCAACTGGCCGCCGCC ACTGCGCGCATCGGCGTGGCCAAGGCCGATCTGTTCCCACGGGTCAGCCTGAGCGGTTTCCTCGGTTTCACCGCCGGACGCGGTTCGCAGATCGGCTCCT CGGCGGCCAACGCCTGGGCGCTGGGCCCAAGCATTACCTGGGCGGCTTTCGACCTGGGCAGCGTGCGGGCTCGCTTGCGCGGTGCCGACGCCGAGGCGGA CGGCGCCTTGGCGACCTACGAACAGCAAGTGCTGCTGGCCCTGGAAGAATCGGAAAATGCCTTCAGCGACTACGGCAAGCGCCAACAACGGCTGATCTCG CTGATCCGCCAGAGTGAATCGAGCCGCGCCGCCGCCGACCTGGCCGAGATTCGCTACCGCGAAGGCACCGAGGACTTCCTCGTACTGCTCGACGCCCAGC GCGAACGCCTGGCCGCCGAAGACACCCAGGCCCAGGCCGAAGTGGACCTGCACCGCGGCATCGTCGCGATCTACAAGGCCCTGGGCGGCGGCTGGAAACC GGAGACCGTTGCCAGCAACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCACCCTTCTCAACCGAGCTCCTTTGGTTGGCCGCAACCAGCCAAATTTTTGCCCCGCCTCTCATTTGGACGCGGGGCTTTTTTTCGGCTGTAACCCAA AGCCCTTGTGCGAGCCCATTGTGGGAGCGAGCTTGCTCGCGATGGCGGTGGGTCAGGTTGCATTAATGCTGAAGGTGCCGGCCTCATCGCGAGCAAGCTC GCTCCCACAGAGTTCATCACCGCTGTTACAAGGTTTGACTCAAGCCCCCACCTGACCGAAGCTTGCGACATTTCACGCTTCTGGTAATGGATTCCCTGCA TGCTCTCGCCTCGCCGCCGCTATCTGCTCCTCAGCCTCTGTGTCCTGTTGGTGATCGGTCTTGTCGCGGTGTGGCTACGCAGCACCACGCCGCAAATCCC CGAAGCGATCAAGCGTGGCTACAGTGAAGCCCTGGAAAGCGCTCGCAACGGGCAGCCAGGGGCGGCACGGATGCTTTACCAGCAATTGGGGCGTCCAGAC
|
|
| Amino Acid Sequence |
>protein OprN
MSLKAFVPSLLVLALSACAVGPDYKAPQTEAANITTATDGAAGQKNFDRARFEGIWWQQFDDPTLNALVTRSLEGNRELRVAFARLRAARAIRDDASNDA MPTITSRASSNLGKGQIPGQTTDRVNTERYDLGLDMAWELDLFGRIQRNLEATDADQQAIEADLYQLQVTMIAELVDAYGQLRGAQLREKIALANLKNQQ DSRKITESLRDAGVGDQLDVVRADARLAAVEASVPQLQAEQVRQRNRIATLLGERPDKLSVDLSPKQLPAIAKALPIGDPGELLQRRPDILSAERQLAAA TARIGVAKADLFPRVSLSGFLGFTAGRGSQIGSSAANAWALGPSITWAAFDLGSVRARLRGADAEADGALATYEQQVLLALEESENAFSDYGKRQQRLIS LIRQSESSRAAADLAEIRYREGTEDFLVLLDAQRERLAAEDTQAQAEVDLHRGIVAIYKALGGGWKPETVASN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|